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1ZY3
Asym. Unit
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Asym.Unit (487 KB)
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Models
(10 )
Title
:
STRUCTURAL MODEL OF COMPLEX OF BCL-W PROTEIN WITH BID BH3-PEPTIDE
Authors
:
A. Y. Denisov, K. Gehring
Date
:
09 Jun 05 (Deposition) - 14 Feb 06 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B (10 x)
Keywords
:
Apoptosis, Bcl-W, Bh3-Peptide
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Y. Denisov, G. Chen, T. Sprules, T. Moldoveanu, P. Beauparlant, K. Gehring
Structural Model Of The Bcl-W-Bid Peptide Complex And Its Interactions With Phospholipid Micelles.
Biochemistry V. 45 2250 2006
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_048418 (R132R, chain A, )
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_048418
Q
133
R
B2CL2_HUMAN
Polymorphism
910332
A
R
132
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(6, 6)
Info
All PROSITE Patterns/Profiles
1: BH4_1 (A:8-28)
2: BH4_2 (A:9-26)
3: BCL2_FAMILY (A:45-145)
4: BH1 (A:84-103)
5: BH3 (B:205-219)
6: BH2 (A:136-147)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BH4_1
PS01260
Apoptosis regulator, Bcl-2 family BH4 motif signature.
B2CL2_HUMAN
9-29
1
A:8-28
2
BH4_2
PS50063
Apoptosis regulator, Bcl-2 family BH4 motif profile.
B2CL2_HUMAN
10-27
1
A:9-26
3
BCL2_FAMILY
PS50062
BCL2-like apoptosis inhibitors family profile.
B2CL2_HUMAN
46-146
1
A:45-145
4
BH1
PS01080
Apoptosis regulator, Bcl-2 family BH1 motif signature.
B2CL2_HUMAN
85-104
1
A:84-103
5
BH3
PS01259
Apoptosis regulator, Bcl-2 family BH3 motif signature.
BID_HUMAN
86-100
1
B:205-219
6
BH2
PS01258
Apoptosis regulator, Bcl-2 family BH2 motif signature.
B2CL2_HUMAN
137-148
1
A:136-147
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Exons
(3, 3)
Info
All Exons
Exon 1.3 (A:1-143)
Exon 1.4 (A:144-170)
Exon 2.5d (B:201-220)
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All Exon Boundaries
1: Boundary 1.2/1.3
2: Boundary 1.3/1.4
3: Boundary 1.4/-
4: Boundary 2.4/2.5d
5: Boundary 2.5d/2.6b
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000250405
1
ENSE00001031653
chr14:
23776026-23776103
78
B2CL2_HUMAN
-
0
0
-
-
1.2
ENST00000250405
2
ENSE00001031651
chr14:
23776401-23776488
88
B2CL2_HUMAN
-
0
0
-
-
1.3
ENST00000250405
3
ENSE00000889210
chr14:
23776969-23777408
440
B2CL2_HUMAN
1-144
144
1
A:1-143
143
1.4
ENST00000250405
4
ENSE00001031652
chr14:
23778025-23780968
2944
B2CL2_HUMAN
145-193
49
1
A:144-170
27
2.1b
ENST00000399774
1b
ENSE00001540140
chr22:
18257258-18257147
112
BID_HUMAN
-
0
0
-
-
2.3
ENST00000399774
3
ENSE00002194975
chr22:
18232940-18232871
70
BID_HUMAN
1-4
4
0
-
-
2.4
ENST00000399774
4
ENSE00001752867
chr22:
18226779-18226569
211
BID_HUMAN
5-75
71
0
-
-
2.5d
ENST00000399774
5d
ENSE00001643928
chr22:
18222254-18222115
140
BID_HUMAN
75-121
47
1
B:201-220
20
2.6b
ENST00000399774
6b
ENSE00001767385
chr22:
18220995-18220783
213
BID_HUMAN
122-192
71
0
-
-
2.7e
ENST00000399774
7e
ENSE00001856820
chr22:
18218357-18216937
1421
BID_HUMAN
193-195
3
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1zy3a1 (A:1-170)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Toxins' membrane translocation domains
(135)
Superfamily
:
Bcl-2 inhibitors of programmed cell death
(113)
Family
:
Bcl-2 inhibitors of programmed cell death
(102)
Protein domain
:
Apoptosis regulator Bcl-w
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1zy3a1
A:1-170
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(3, 3)
Info
all PFAM domains
1a: PFAM_BH4_1zy3A01 (A:5-31)
2a: PFAM_BID_1zy3B01 (B:201-220)
3a: PFAM_Bcl_2_1zy3A02 (A:45-143)
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)
Clan
:
no clan defined [family: BH4]
(30)
Family
:
BH4
(30)
Homo sapiens (Human)
(26)
1a
BH4-1zy3A01
A:5-31
Clan
:
no clan defined [family: BID]
(3)
Family
:
BID
(3)
Homo sapiens (Human)
(2)
2a
BID-1zy3B01
B:201-220
Clan
:
no clan defined [family: Bcl-2]
(60)
Family
:
Bcl-2
(60)
Homo sapiens (Human)
(44)
3a
Bcl-2-1zy3A02
A:45-143
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