PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1ZXV
Asym. Unit
Info
Asym.Unit (250 KB)
Biol.Unit 1 (124 KB)
Biol.Unit 2 (126 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
X-RAY CRYSTAL STRUCTURE OF THE ANTHRAX LETHAL FACTOR BOUND TO A SMALL MOLECULE INHIBITOR, BI-MFM3, 3-{5-[5-(4-CHLORO-PHENYL)-FURAN-2-YLMETHYLENE]-4-OXO-2-THIOXO-THIAZOLIDIN-3-YL}-PROPIONIC ACID.
Authors
:
T. Y. Wong, R. C. Liddington
Date
:
08 Jun 05 (Deposition) - 05 Jul 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.67
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Anthrax Toxin Lethal Factor, Protein And Small Molecule Inhibitor Complex, Zinc Metalloproteinase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Forino, S. Johnson, T. Y. Wong, D. V. Rozanov, A. Y. Savinov, W. Li, R. Fattorusso, B. Becattini, A. J. Orry, D. Jung, R. A. Abagyan, J. W. Smith, K. Alibek, R. C. Liddington, A. Y. Strongin, M. Pellecchia
Efficient Synthetic Inhibitors Of Anthrax Lethal Factor.
Proc. Natl. Acad. Sci. Usa V. 102 9499 2005
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 4)
Info
All Hetero Components
1a: (E)-3-(5((5-(4-CHLOROPHENYL)FURAN-... (MFMa)
1b: (E)-3-(5((5-(4-CHLOROPHENYL)FURAN-... (MFMb)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MFM
2
Ligand/Ion
(E)-3-(5((5-(4-CHLOROPHENYL)FURAN-2-YL)METHYLENE)-4-OXO-2-THIOXOTHIAZOLIDIN-3-YL)PROPANOIC ACID
2
ZN
2
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:686 , HIS A:690 , TYR A:728 , GLU A:735 , MFM A:9002
BINDING SITE FOR RESIDUE ZN A 9001
2
AC2
SOFTWARE
HIS B:686 , HIS B:690 , TYR B:728 , GLU B:735 , MFM B:9003
BINDING SITE FOR RESIDUE ZN B 9002
3
AC3
SOFTWARE
SER A:655 , GLY A:657 , LEU A:658 , TYR A:659 , GLU A:662 , GLU A:687 , HIS A:690 , TYR A:728 , GLU A:735 , ZN A:9001
BINDING SITE FOR RESIDUE MFM A 9002
4
AC4
SOFTWARE
SER B:655 , GLY B:657 , PRO B:661 , GLU B:662 , HIS B:686 , GLU B:687 , HIS B:690 , TYR B:728 , GLU B:735 , ZN B:9002
BINDING SITE FOR RESIDUE MFM B 9003
[
close Site info
]
SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_LEF_BACAN_001 (S266S, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_LEF_BACAN_001
*
A
299
S
LEF_BACAN
---
---
A/B
S
266
S
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ZINC_PROTEASE (A:683-692,B:683-692)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
LEF_BACAN
716-725
2
A:683-692
B:683-692
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d1zxva3 (A:264-550)
1b: SCOP_d1zxvb3 (B:264-550)
2a: SCOP_d1zxva1 (A:27-263)
2b: SCOP_d1zxva2 (A:551-776)
2c: SCOP_d1zxvb1 (B:27-263)
2d: SCOP_d1zxvb2 (B:551-776)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
ADP-ribosylation
(157)
Superfamily
:
ADP-ribosylation
(157)
Family
:
ADP-ribosylating toxins
(85)
Protein domain
:
Anthrax toxin lethal factor, middle domain
(9)
Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
(9)
1a
d1zxva3
A:264-550
1b
d1zxvb3
B:264-550
Fold
:
Zincin-like
(701)
Superfamily
:
Metalloproteases (zincins), catalytic domain
(647)
Family
:
Anthrax toxin lethal factor, N- and C-terminal domains
(10)
Protein domain
:
Anthrax toxin lethal factor, N- and C-terminal domains
(9)
Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
(9)
2a
d1zxva1
A:27-263
2b
d1zxva2
A:551-776
2c
d1zxvb1
B:27-263
2d
d1zxvb2
B:551-776
[
close SCOP info
]
CATH Domains
(3, 8)
Info
all CATH domains
1a: CATH_1zxvA04 (A:552-776)
1b: CATH_1zxvA01 (A:27-248)
1c: CATH_1zxvB01 (B:27-248)
1d: CATH_1zxvB04 (B:552-776)
2a: CATH_1zxvA02 (A:263-297,A:385-550)
2b: CATH_1zxvB02 (B:263-297,B:385-550)
3a: CATH_1zxvB03 (B:303-382)
3b: CATH_1zxvA03 (A:303-382)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Collagenase (Catalytic Domain)
(236)
Homologous Superfamily
:
Collagenase (Catalytic Domain)
(234)
Bacillus anthracis. Organism_taxid: 1392.
(15)
1a
1zxvA04
A:552-776
1b
1zxvA01
A:27-248
1c
1zxvB01
B:27-248
1d
1zxvB04
B:552-776
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Toxin ADP-ribosyltransferase; Chain A, domain 1
(46)
Homologous Superfamily
:
Toxin ADP-ribosyltransferase; Chain A, domain 1
(46)
Bacillus anthracis. Organism_taxid: 1392.
(8)
2a
1zxvA02
A:263-297,A:385-550
2b
1zxvB02
B:263-297,B:385-550
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Anthrax toxin lethal factor, domain 3, chain A
(9)
Homologous Superfamily
:
Anthrax toxin lethal factor, domain 3, chain A
(9)
Bacillus anthracis. Organism_taxid: 1392.
(8)
3a
1zxvB03
B:303-382
3b
1zxvA03
A:303-382
[
close CATH info
]
Pfam Domains
(2, 6)
Info
all PFAM domains
1a: PFAM_ATLF_1zxvB01 (B:553-775)
1b: PFAM_ATLF_1zxvB02 (B:553-775)
1c: PFAM_ATLF_1zxvB03 (B:553-775)
1d: PFAM_ATLF_1zxvB04 (B:553-775)
2a: PFAM_Anthrax_tox_M_1zxvB05 (B:264-550)
2b: PFAM_Anthrax_tox_M_1zxvB06 (B:264-550)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: ATLF]
(15)
Family
:
ATLF
(15)
Bacillus anthracis
(15)
1a
ATLF-1zxvB01
B:553-775
1b
ATLF-1zxvB02
B:553-775
1c
ATLF-1zxvB03
B:553-775
1d
ATLF-1zxvB04
B:553-775
Clan
:
no clan defined [family: Anthrax-tox_M]
(6)
Family
:
Anthrax-tox_M
(6)
Bacillus anthracis
(6)
2a
Anthrax-tox_M-1zxvB05
B:264-550
2b
Anthrax-tox_M-1zxvB06
B:264-550
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (250 KB)
Header - Asym.Unit
Biol.Unit 1 (124 KB)
Header - Biol.Unit 1
Biol.Unit 2 (126 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1ZXV
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
