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1ZXE
Asym. Unit
Info
Asym.Unit (281 KB)
Biol.Unit 1 (94 KB)
Biol.Unit 2 (96 KB)
Biol.Unit 3 (91 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF EIF2ALPHA PROTEIN KINASE GCN2: D835N INACTIVATING MUTANT IN APO FORM
Authors
:
A. K. Padyana, H. Qiu, A. Roll-Mecak, A. G. Hinnebusch, S. K. Burley
Date
:
07 Jun 05 (Deposition) - 21 Jun 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Keywords
:
Translation Regulator, Protein Kinase, Signal Transduction, Amino- Acid Starvation, Starvation Stress Response, Eif2Alpha Kinase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. K. Padyana, H. Qiu, A. Roll-Mecak, A. G. Hinnebusch, S. K. Burley
Structural Basis For Autoinhibition And Mutational Activation Of Eukaryotic Initiation Factor 2{Alpha} Protein Kinase Gcn2
J. Biol. Chem. V. 280 29289 2005
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Hetero Components
(2, 54)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
2a: SELENOMETHIONINE (MSEa)
2aa: SELENOMETHIONINE (MSEaa)
2ab: SELENOMETHIONINE (MSEab)
2ac: SELENOMETHIONINE (MSEac)
2ad: SELENOMETHIONINE (MSEad)
2ae: SELENOMETHIONINE (MSEae)
2af: SELENOMETHIONINE (MSEaf)
2ag: SELENOMETHIONINE (MSEag)
2ah: SELENOMETHIONINE (MSEah)
2ai: SELENOMETHIONINE (MSEai)
2aj: SELENOMETHIONINE (MSEaj)
2ak: SELENOMETHIONINE (MSEak)
2al: SELENOMETHIONINE (MSEal)
2am: SELENOMETHIONINE (MSEam)
2an: SELENOMETHIONINE (MSEan)
2ao: SELENOMETHIONINE (MSEao)
2ap: SELENOMETHIONINE (MSEap)
2aq: SELENOMETHIONINE (MSEaq)
2ar: SELENOMETHIONINE (MSEar)
2as: SELENOMETHIONINE (MSEas)
2at: SELENOMETHIONINE (MSEat)
2au: SELENOMETHIONINE (MSEau)
2av: SELENOMETHIONINE (MSEav)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
2u: SELENOMETHIONINE (MSEu)
2v: SELENOMETHIONINE (MSEv)
2w: SELENOMETHIONINE (MSEw)
2x: SELENOMETHIONINE (MSEx)
2y: SELENOMETHIONINE (MSEy)
2z: SELENOMETHIONINE (MSEz)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
6
Ligand/Ion
GLYCEROL
2
MSE
48
Mod. Amino Acid
SELENOMETHIONINE
[
close Hetero Component info
]
Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:15 , HOH A:85 , HOH A:151 , VAL A:656 , GLU A:789 , TYR A:790 , CYS A:791
BINDING SITE FOR RESIDUE GOL A 398
2
AC2
SOFTWARE
HOH B:23 , VAL B:656 , GLU B:789 , TYR B:790 , CYS B:791
BINDING SITE FOR RESIDUE GOL B 498
3
AC3
SOFTWARE
HOH C:6 , HOH C:122 , LEU C:605 , ALA C:626 , VAL C:656 , GLU C:789 , TYR C:790 , CYS C:791
BINDING SITE FOR RESIDUE GOL C 998
4
AC4
SOFTWARE
HOH D:48 , HOH D:129 , VAL D:656 , GLU D:789 , TYR D:790 , CYS D:791
BINDING SITE FOR RESIDUE GOL D 698
5
AC5
SOFTWARE
HOH E:88 , ALA E:626 , VAL E:656 , GLU E:789 , TYR E:790 , CYS E:791 , PHE E:842
BINDING SITE FOR RESIDUE GOL E 998
6
AC6
SOFTWARE
ALA F:626 , VAL F:656 , GLU F:789 , TYR F:790 , CYS F:791
BINDING SITE FOR RESIDUE GOL F 998
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 12)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:605-629,B:605-629,C:605-629,D:60...)
2: PROTEIN_KINASE_ST (A:831-843,B:831-843,C:831-843,D:83...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
GCN2_YEAST
605-629
6
A:605-629
B:605-629
C:605-629
D:605-629
E:605-629
F:605-629
2
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
GCN2_YEAST
831-843
6
A:831-843
B:831-843
C:831-843
D:831-843
E:831-843
F:831-843
[
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Exons
(1, 6)
Info
All Exons
Exon 1.1 (A:592-995 (gaps) | B:592-984 (gaps...)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YDR283C
1
YDR283C.1
IV:1030046-1025067
4980
GCN2_YEAST
1-1659
1659
6
A:592-995 (gaps)
B:592-984 (gaps)
C:592-996 (gaps)
D:592-984 (gaps)
E:592-995 (gaps)
F:592-984 (gaps)
424
413
425
413
424
413
[
close EXON info
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SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1zxea_ (A:)
1b: SCOP_d1zxeb_ (B:)
1c: SCOP_d1zxec_ (C:)
1d: SCOP_d1zxed_ (D:)
1e: SCOP_d1zxee_ (E:)
1f: SCOP_d1zxef_ (F:)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
automated matches
(529)
Protein domain
:
automated matches
(529)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(20)
1a
d1zxea_
A:
1b
d1zxeb_
B:
1c
d1zxec_
C:
1d
d1zxed_
D:
1e
d1zxee_
E:
1f
d1zxef_
F:
[
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1zxeA01 (A:592-794)
1b: CATH_1zxeC01 (C:592-794)
1c: CATH_1zxeE01 (E:592-794)
1d: CATH_1zxeB01 (B:592-794)
1e: CATH_1zxeD01 (D:592-794)
1f: CATH_1zxeF01 (F:592-794)
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Topologies
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Baker's yeast (Saccharomyces cerevisiae)
(32)
1a
1zxeA01
A:592-794
1b
1zxeC01
C:592-794
1c
1zxeE01
E:592-794
1d
1zxeB01
B:592-794
1e
1zxeD01
D:592-794
1f
1zxeF01
F:592-794
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Pfam Domains
(1, 12)
Info
all PFAM domains
1a: PFAM_Pkinase_1zxeF01 (F:768-981)
1b: PFAM_Pkinase_1zxeF02 (F:768-981)
1c: PFAM_Pkinase_1zxeF03 (F:768-981)
1d: PFAM_Pkinase_1zxeF04 (F:768-981)
1e: PFAM_Pkinase_1zxeF05 (F:768-981)
1f: PFAM_Pkinase_1zxeF06 (F:768-981)
1g: PFAM_Pkinase_1zxeF07 (F:768-981)
1h: PFAM_Pkinase_1zxeF08 (F:768-981)
1i: PFAM_Pkinase_1zxeF09 (F:768-981)
1j: PFAM_Pkinase_1zxeF10 (F:768-981)
1k: PFAM_Pkinase_1zxeF11 (F:768-981)
1l: PFAM_Pkinase_1zxeF12 (F:768-981)
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Clans
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Families
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(
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Organisms
(
)
(
)
Clan
:
PKinase
(934)
Family
:
Pkinase
(680)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(15)
1a
Pkinase-1zxeF01
F:768-981
1b
Pkinase-1zxeF02
F:768-981
1c
Pkinase-1zxeF03
F:768-981
1d
Pkinase-1zxeF04
F:768-981
1e
Pkinase-1zxeF05
F:768-981
1f
Pkinase-1zxeF06
F:768-981
1g
Pkinase-1zxeF07
F:768-981
1h
Pkinase-1zxeF08
F:768-981
1i
Pkinase-1zxeF09
F:768-981
1j
Pkinase-1zxeF10
F:768-981
1k
Pkinase-1zxeF11
F:768-981
1l
Pkinase-1zxeF12
F:768-981
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