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Asym. Unit
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Asym.Unit (40 KB)
Biol.Unit 1 (36 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CHICK MN-CADHERIN EC1
Authors
:
S. D. Patel, C. Ciatto, C. P. Chen, F. Bahna, I. Schieren, M. Rajebhosale T. M. Jessell, B. Honig, L. Shapiro, S. R. Price
Date
:
02 Jun 05 (Deposition) - 25 Apr 06 (Release) - 10 Apr 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.16
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Cadherin, Cell Adhesion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. D. Patel, C. Ciatto, C. P. Chen, F. Bahna, M. Rajebhosale, N. Arkus, I. Schieren, T. M. Jessell, B. Honig, S. R. Price, L. Shapiro
Type Ii Cadherin Ectodomain Structures: Implications For Classical Cadherin Specificity.
Cell(Cambridge, Mass. ) V. 124 1255 2006
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Hetero Components
(0, 0)
Info
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Sorry, no Info available
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: CADHERIN_2 (A:26-98,B:26-98|-|-|-|-)
2: CADHERIN_1 (A:94-98,B:94-98|-|-)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CADHERIN_2
PS50268
Cadherins domain profile.
CAD20_CHICK
84-164
165-273
274-392
389-493
493-615
2
A:26-98
B:26-98
-
-
-
-
2
CADHERIN_1
PS00232
Cadherin domain signature.
CAD20_CHICK
152-162
261-271
481-491
2
A:94-98
B:94-98
-
-
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Exons
(2, 4)
Info
All Exons
Exon 1.3 (A:0-23 (gaps) | B:0-23 (gaps))
Exon 1.4 (A:24-98 | B:24-98)
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All Exon Boundaries
1: Boundary 1.2/1.3
2: Boundary 1.3/1.4
3: Boundary 1.4/1.5
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSGALT00000021043
1
ENSGALE00000242502
chr2:
69921434-69921379
56
CAD20_CHICK
-
0
0
-
-
1.2
ENSGALT00000021043
2
ENSGALE00000242501
chr2:
69859682-69859547
136
CAD20_CHICK
-
0
0
-
-
1.3
ENSGALT00000021043
3
ENSGALE00000139228
chr2:
69843828-69843468
361
CAD20_CHICK
1-81
81
2
A:0-23 (gaps)
B:0-23 (gaps)
48
48
1.4
ENSGALT00000021043
4
ENSGALE00000139226
chr2:
69837367-69837073
295
CAD20_CHICK
82-180
99
2
A:24-98
B:24-98
75
75
1.5
ENSGALT00000021043
5
ENSGALE00000139227
chr2:
69835361-69835242
120
CAD20_CHICK
180-220
41
0
-
-
1.6
ENSGALT00000021043
6
ENSGALE00000139221
chr2:
69832210-69832043
168
CAD20_CHICK
220-276
57
0
-
-
1.7b
ENSGALT00000021043
7b
ENSGALE00000139222
chr2:
69830159-69829972
188
CAD20_CHICK
276-338
63
0
-
-
1.8
ENSGALT00000021043
8
ENSGALE00000139225
chr2:
69826767-69826514
254
CAD20_CHICK
339-423
85
0
-
-
1.9
ENSGALT00000021043
9
ENSGALE00000139223
chr2:
69822867-69822731
137
CAD20_CHICK
423-469
47
0
-
-
1.10
ENSGALT00000021043
10
ENSGALE00000139224
chr2:
69820223-69820102
122
CAD20_CHICK
469-509
41
0
-
-
1.11
ENSGALT00000021043
11
ENSGALE00000139219
chr2:
69818385-69818268
118
CAD20_CHICK
510-549
40
0
-
-
1.12
ENSGALT00000021043
12
ENSGALE00000139217
chr2:
69812227-69811976
252
CAD20_CHICK
549-633
85
0
-
-
1.13b
ENSGALT00000021043
13b
ENSGALE00000139220
chr2:
69810167-69809207
961
CAD20_CHICK
633-798
166
0
-
-
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1zvna_ (A:)
1b: SCOP_d1zvnb_ (B:)
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)
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)
Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Cadherin-like
(44)
Family
:
automated matches
(13)
Protein domain
:
automated matches
(13)
Chicken (Gallus gallus) [TaxId: 9031]
(4)
1a
d1zvna_
A:
1b
d1zvnb_
B:
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CATH Domains
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all CATH domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Cadherin_1zvnB01 (B:5-97)
1b: PFAM_Cadherin_1zvnB02 (B:5-97)
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Clan
:
E-set
(290)
Family
:
Cadherin
(41)
Gallus gallus (Chicken)
(3)
1a
Cadherin-1zvnB01
B:5-97
1b
Cadherin-1zvnB02
B:5-97
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Asymmetric Unit 1
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