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1ZUW
Biol. Unit 2
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Asym.Unit (144 KB)
Biol.Unit 1 (97 KB)
Biol.Unit 2 (89 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF B.SUBTILIS GLUTAMATE RACEMASE (RACE) WITH D-GLU
Authors
:
S. N. Ruzheinikov, M. A. Taal, S. E. Sedelnikova, P. J. Baker, D. W. Rice
Date
:
01 Jun 05 (Deposition) - 06 Dec 05 (Release) - 16 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B (2x)
Keywords
:
Glutamate Racemase; (R)-Glutamate; Peptidoglycan Biosynthesis, Isomerase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. N. Ruzheinikov, M. A. Taal, S. E. Sedelnikova, P. J. Baker, D. W. Rice
Substrate-Induced Conformational Changes In Bacillus Subtilis Glutamate Racemase And Their Implications For Drug Discovery
Structure V. 13 1707 2005
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: D-GLUTAMIC ACID (DGLa)
1b: D-GLUTAMIC ACID (DGLb)
1c: D-GLUTAMIC ACID (DGLc)
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No.
Name
Count
Type
Full Name
1
DGL
2
Ligand/Ion
D-GLUTAMIC ACID
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Sites
(1, 1)
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1: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
ASP B:10 , SER B:11 , PRO B:41 , TYR B:42 , GLY B:43 , CYS B:74 , ASN B:75 , THR B:76 , CYS B:185 , THR B:186 , HIS B:187 , HOH B:2318 , HOH B:2341
BINDING SITE FOR RESIDUE DGL B 2301
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(2, 4)
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1: ASP_GLU_RACEMASE_1 (B:71-79)
2: ASP_GLU_RACEMASE_2 (B:181-191)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ASP_GLU_RACEMASE_1
PS00923
Aspartate and glutamate racemases signature 1.
MURI1_BACSU
71-79
2
-
B:71-79
-
2
ASP_GLU_RACEMASE_2
PS00924
Aspartate and glutamate racemases signature 2.
MURI1_BACSU
181-191
2
-
B:181-191
-
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Exons
(0, 0)
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SCOP Domains
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1zuwA02 (A:96-208)
1b: CATH_1zuwB02 (B:96-208)
1c: CATH_1zuwC02 (C:96-208)
1d: CATH_1zuwB01 (B:2-95,B:209-266)
1e: CATH_1zuwA01 (A:1-95,A:209-266)
1f: CATH_1zuwC01 (C:2-95,C:209-268)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1860, no name defined]
(18)
Bacillus subtilis. Organism_taxid: 1423.
(1)
1a
1zuwA02
A:96-208
1b
1zuwB02
B:96-208
1c
1zuwC02
C:96-208
1d
1zuwB01
B:2-95,B:209-266
1e
1zuwA01
A:1-95,A:209-266
1f
1zuwC01
C:2-95,C:209-268
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Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_Asp_Glu_race_1zuwC01 (C:6-217)
1b: PFAM_Asp_Glu_race_1zuwC02 (C:6-217)
1c: PFAM_Asp_Glu_race_1zuwC03 (C:6-217)
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Clan
:
Asp-glut_race
(23)
Family
:
Asp_Glu_race
(23)
Bacillus subtilis
(1)
1a
Asp_Glu_race-1zuwC01
C:6-217
1b
Asp_Glu_race-1zuwC02
C:6-217
1c
Asp_Glu_race-1zuwC03
C:6-217
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