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1ZUA
Asym. Unit
Info
Asym.Unit (134 KB)
Biol.Unit 1 (128 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AKR1B10 COMPLEXED WITH NADP+ AND TOLRESTAT
Authors
:
O. Gallego, F. X. Ruiz, A. Ardevol, M. Dominguez, R. Alvarez, A. R. De Lera, C. Rovira, J. Farres, I. Fita, X. Pares
Date
:
30 May 05 (Deposition) - 07 Nov 06 (Release) - 26 May 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.25
Chains
:
Asym. Unit : X
Biol. Unit 1: X (1x)
Keywords
:
Alpha-Beta Barrel, Aldo-Keto Reductase, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
O. Gallego, F. X. Ruiz, A. Ardevol, M. Dominguez, R. Alvarez, A. R. De Lera, C. Rovira, J. Farres, I. Fita, X. Pares
Structural Basis For The High All-Trans-Retinaldehyde Reductase Activity Of The Tumor Marker Akr1B10.
Proc. Natl. Acad. Sci. Usa V. 104 20764 2007
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
2a: TOLRESTAT (TOLa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAP
1
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2
TOL
1
Ligand/Ion
TOLRESTAT
[
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY X:19 , THR X:20 , TRP X:21 , LYS X:22 , ASP X:44 , TYR X:49 , HIS X:111 , TRP X:112 , SER X:160 , ASN X:161 , GLN X:184 , TYR X:210 , SER X:211 , PRO X:212 , LEU X:213 , GLY X:214 , SER X:215 , PRO X:216 , ASP X:217 , ALA X:246 , ILE X:261 , PRO X:262 , LYS X:263 , SER X:264 , VAL X:265 , THR X:266 , ARG X:269 , GLU X:272 , ASN X:273 , TOL X:1320 , HOH X:1365 , HOH X:1411 , HOH X:1421 , HOH X:1501 , HOH X:1514 , HOH X:1585
BINDING SITE FOR RESIDUE NAP X 350
2
AC2
SOFTWARE
TRP X:21 , TYR X:49 , TRP X:80 , HIS X:111 , TRP X:112 , GLN X:114 , PHE X:116 , PHE X:123 , ASP X:150 , VAL X:301 , GLN X:303 , NAP X:350 , HOH X:1367
BINDING SITE FOR RESIDUE TOL X 1320
[
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SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_020077 (P87S, chain X, )
2: VAR_020078 (M286T, chain X, )
3: VAR_013287 (N313D, chain X, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_020077
P
87
S
AK1BA_HUMAN
Polymorphism
2303312
X
P
87
S
2
UniProt
VAR_020078
M
286
T
AK1BA_HUMAN
Polymorphism
3735042
X
M
286
T
3
UniProt
VAR_013287
N
313
D
AK1BA_HUMAN
Polymorphism
4728329
X
N
313
D
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: ALDOKETO_REDUCTASE_1 (X:39-56)
2: ALDOKETO_REDUCTASE_2 (X:145-162)
3: ALDOKETO_REDUCTASE_3 (X:261-276)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDOKETO_REDUCTASE_1
PS00798
Aldo/keto reductase family signature 1.
AK1BA_HUMAN
39-56
1
X:39-56
2
ALDOKETO_REDUCTASE_2
PS00062
Aldo/keto reductase family signature 2.
AK1BA_HUMAN
145-162
1
X:145-162
3
ALDOKETO_REDUCTASE_3
PS00063
Aldo/keto reductase family putative active site signature.
AK1BA_HUMAN
261-276
1
X:261-276
[
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]
Exons
(10, 10)
Info
All Exons
Exon 1.1a (X:1-22)
Exon 1.2 (X:23-78)
Exon 1.3 (X:79-117)
Exon 1.4 (X:118-143)
Exon 1.6a (X:144-184)
Exon 1.7b (X:185-220)
Exon 1.8a (X:220-247)
Exon 1.9b (X:248-275)
Exon 1.10a (X:276-303)
Exon 1.11 (X:303-316)
View:
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All Exon Boundaries
01: Boundary -/1.1a
02: Boundary 1.1a/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.6a
06: Boundary 1.6a/1.7b
07: Boundary 1.7b/1.8a
08: Boundary 1.8a/1.9b
09: Boundary 1.9b/1.10a
10: Boundary 1.10a/1.11
11: Boundary 1.11/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000359579
1a
ENSE00001425200
chr7:
134212344-134212729
386
AK1BA_HUMAN
1-22
22
1
X:1-22
22
1.2
ENST00000359579
2
ENSE00001754245
chr7:
134215395-134215562
168
AK1BA_HUMAN
23-78
56
1
X:23-78
56
1.3
ENST00000359579
3
ENSE00000724366
chr7:
134216660-134216776
117
AK1BA_HUMAN
79-117
39
1
X:79-117
39
1.4
ENST00000359579
4
ENSE00000724370
chr7:
134217756-134217833
78
AK1BA_HUMAN
118-143
26
1
X:118-143
26
1.6a
ENST00000359579
6a
ENSE00001795723
chr7:
134221402-134221524
123
AK1BA_HUMAN
144-184
41
1
X:144-184
41
1.7b
ENST00000359579
7b
ENSE00001654706
chr7:
134221803-134221909
107
AK1BA_HUMAN
185-220
36
1
X:185-220
36
1.8a
ENST00000359579
8a
ENSE00001591782
chr7:
134222332-134222413
82
AK1BA_HUMAN
220-247
28
1
X:220-247
28
1.9b
ENST00000359579
9b
ENSE00001720494
chr7:
134222946-134223029
84
AK1BA_HUMAN
248-275
28
1
X:248-275
28
1.10a
ENST00000359579
10a
ENSE00001421021
chr7:
134223687-134223769
83
AK1BA_HUMAN
276-303
28
1
X:276-303
28
1.11
ENST00000359579
11
ENSE00001897409
chr7:
134225799-134226160
362
AK1BA_HUMAN
303-316
14
1
X:303-316
14
[
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]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1zuax_ (X:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
NAD(P)-linked oxidoreductase
(286)
Family
:
Aldo-keto reductases (NADP)
(251)
Protein domain
:
Aldose reductase (aldehyde reductase)
(107)
Human (Homo sapiens) [TaxId: 9606]
(96)
1a
d1zuax_
X:
[
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1zuaX00 (X:902-316)
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
NADP-dependent oxidoreductase
(181)
Human (Homo sapiens)
(116)
1a
1zuaX00
X:902-316
[
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Aldo_ket_red_1zuaX01 (X:15-294)
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Clans
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Families
(
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(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Aldo_ket_red]
(94)
Family
:
Aldo_ket_red
(94)
Homo sapiens (Human)
(60)
1a
Aldo_ket_red-1zuaX01
X:15-294
[
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]
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Asymmetric Unit 1
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Asym.Unit (134 KB)
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