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1ZT7
Biol. Unit 2
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Asym.Unit (270 KB)
Biol.Unit 1 (134 KB)
Biol.Unit 2 (134 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CLASS I MHC H-2KK IN COMPLEX WITH A NONAPEPTIDE
Authors
:
C. Kellenberger, A. Roussel, B. Malissen
Date
:
26 May 05 (Deposition) - 18 Oct 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D,P,Q
Biol. Unit 1: A,B,P (1x)
Biol. Unit 2: C,D,Q (1x)
Keywords
:
Peptide Binding Groove, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Kellenberger, A. Roussel, B. Malissen
The H-2Kk Mhc Peptide-Binding Groove Anchors The Backbone Of An Octameric Antigenic Peptide In An Unprecedented Mode
J. Immunol. V. 175 3819 2005
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(6, 6)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_B2MG_MOUSE_002 (H34Q, chain D, )
2: VAR_B2MG_MOUSE_003 (K44E, chain D, )
3: VAR_B2MG_MOUSE_004 (R81T, chain D, )
4: VAR_B2MG_MOUSE_005 (D85D, chain D, )
5: VAR_B2MG_MOUSE_006 (D85V, chain D, )
6: VAR_HA1K_MOUSE_001 (D152A, chain C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_B2MG_MOUSE_002
*
H
54
Q
B2MG_MOUSE
---
---
D
H
34
Q
2
UniProt
VAR_B2MG_MOUSE_003
*
K
64
E
B2MG_MOUSE
---
---
D
K
44
E
3
UniProt
VAR_B2MG_MOUSE_004
*
R
101
T
B2MG_MOUSE
---
---
D
R
81
T
4
UniProt
VAR_B2MG_MOUSE_005
*
A
105
D
B2MG_MOUSE
---
---
D
D
85
D
5
UniProt
VAR_B2MG_MOUSE_006
*
A
105
V
B2MG_MOUSE
---
---
D
D
85
V
6
UniProt
VAR_HA1K_MOUSE_001
*
D
173
A
HA1K_MOUSE
---
---
C
D
152
A
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (C:257-263)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
B2MG_MOUSE
98-104
1
-
D:78-84
HA1K_MOUSE
278-284
1
-
C:257-263
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1zt7b1 (B:1-99)
1b: SCOP_d1zt7d1 (D:1-99)
2a: SCOP_d1zt7a1 (A:181-275)
2b: SCOP_d1zt7c1 (C:181-275)
3a: SCOP_d1zt7a2 (A:1-176)
3b: SCOP_d1zt7c2 (C:1-176)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
beta2-microglobulin
(530)
Mouse (Mus musculus) [TaxId: 10090]
(166)
1a
d1zt7b1
B:1-99
1b
d1zt7d1
D:1-99
Protein domain
:
Class I MHC, alpha-3 domain
(293)
Mouse (Mus musculus) [TaxId: 10090]
(102)
2a
d1zt7a1
A:181-275
2b
d1zt7c1
C:181-275
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
MHC antigen-recognition domain
(585)
Superfamily
:
MHC antigen-recognition domain
(585)
Family
:
MHC antigen-recognition domain
(533)
Protein domain
:
Class I MHC, alpha-1 and alpha-2 domains
(294)
Mouse (Mus musculus), H-2KK [TaxId: 10090]
(2)
3a
d1zt7a2
A:1-176
3b
d1zt7c2
C:1-176
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CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_1zt7A01 (A:1-181)
1b: CATH_1zt7C01 (C:1-181)
2a: CATH_1zt7B00 (B:1-99)
2b: CATH_1zt7A02 (A:182-274)
2c: CATH_1zt7C02 (C:182-274)
2d: CATH_1zt7D00 (D:1-99)
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)
(
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)
(
)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1
(402)
Homologous Superfamily
:
Murine Class I Major Histocompatibility Complex, H2-DB, subunit A, domain 1
(400)
House mouse (Mus musculus)
(92)
1a
1zt7A01
A:1-181
1b
1zt7C01
C:1-181
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
House mouse (Mus musculus)
(616)
2a
1zt7B00
B:1-99
2b
1zt7A02
A:182-274
2c
1zt7C02
C:182-274
2d
1zt7D00
D:1-99
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Pfam Domains
(2, 6)
Info
all PFAM domains
1a: PFAM_C1_set_1zt7D01 (D:11-92)
1b: PFAM_C1_set_1zt7D02 (D:11-92)
1c: PFAM_C1_set_1zt7C01 (C:188-271)
1d: PFAM_C1_set_1zt7C02 (C:188-271)
2a: PFAM_MHC_I_1zt7C03 (C:1-179)
2b: PFAM_MHC_I_1zt7C04 (C:1-179)
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)
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)
Families
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)
(
)
Organisms
(
)
(
)
Clan
:
Ig
(577)
Family
:
C1-set
(338)
Mus musculus (Mouse)
(118)
1a
C1-set-1zt7D01
D:11-92
1b
C1-set-1zt7D02
D:11-92
1c
C1-set-1zt7C01
C:188-271
1d
C1-set-1zt7C02
C:188-271
Clan
:
MHC
(252)
Family
:
MHC_I
(210)
Mus musculus (Mouse)
(60)
2a
MHC_I-1zt7C03
C:1-179
2b
MHC_I-1zt7C04
C:1-179
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Asym.Unit (270 KB)
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