PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1ZSQ
Asym. Unit
Info
Asym.Unit (101 KB)
Biol.Unit 1 (95 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF MTMR2 IN COMPLEX WITH PHOSPHATIDYLINOSITOL 3-PHOSPHATE
Authors
:
M. J. Begley, G. S. Taylor, M. A. Brock, P. Ghosh, V. L. Woods, J. E. Dixon
Date
:
25 May 05 (Deposition) - 31 Jan 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.82
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Protein-Phospholipid Complex, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. J. Begley, G. S. Taylor, M. A. Brock, P. Ghosh, V. L. Woods, J. E. Dixon
Molecular Basis For Substrate Recognition By Mtmr2, A Myotubularin Family Phosphoinositide Phosphatase
Proc. Natl. Acad. Sci. Usa V. 103 927 2006
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 5)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
2a: 2-(BUTANOYLOXY)-1-{[(HYDROXY{[2,3,... (PIBa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
4
Ligand/Ion
1,2-ETHANEDIOL
2
PIB
1
Ligand/Ion
2-(BUTANOYLOXY)-1-{[(HYDROXY{[2,3,4,6-TETRAHYDROXY-5-(PHOSPHONOOXY)CYCLOHEXYL]OXY}PHOSPHORYL)OXY]METHYL}ETHYL BUTANOATE
[
close Hetero Component info
]
Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:458 , ARG A:463 , VAL A:464 , SER A:477 , PRO A:478 , VAL A:479 , PHE A:480 , LEU A:481 , LEU A:512 , HOH A:1040
BINDING SITE FOR RESIDUE EDO A 1878
2
AC2
SOFTWARE
ARG A:360 , ALA A:472 , HOH A:1086 , HOH A:1279
BINDING SITE FOR RESIDUE EDO A 1879
3
AC3
SOFTWARE
LYS A:156 , TYR A:513 , HOH A:1033 , HOH A:1044 , HOH A:1225 , HOH A:1382
BINDING SITE FOR RESIDUE EDO A 1880
4
AC4
SOFTWARE
VAL A:358 , SER A:362 , LYS A:365 , THR A:386 , HIS A:387 , HIS A:391
BINDING SITE FOR RESIDUE EDO A 1881
5
AC5
SOFTWARE
ASN A:330 , LYS A:333 , ASN A:355 , ILE A:356 , SER A:417 , SER A:418 , ASP A:419 , GLY A:420 , TRP A:421 , ASP A:422 , ARG A:423 , ARG A:463 , GLU A:549 , HOH A:1002 , HOH A:1089 , HOH A:1141 , HOH A:3721 , HOH A:3758
BINDING SITE FOR RESIDUE PIB A 3632
[
close Site info
]
SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_047947 (R283W, chain A, )
2: VAR_047256 (N545S, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_047947
R
283
W
MTMR2_HUMAN
Disease (CMT4B1)
---
A
R
283
W
2
UniProt
VAR_047256
N
545
S
MTMR2_HUMAN
Polymorphism
558018
A
N
545
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: PPASE_MYOTUBULARIN (A:205-580)
2: TYR_PHOSPHATASE_2 (A:386-433)
3: TYR_PHOSPHATASE_1 (A:415-425)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PPASE_MYOTUBULARIN
PS51339
Myotubularin phosphatase domain.
MTMR2_HUMAN
205-580
1
A:205-580
2
TYR_PHOSPHATASE_2
PS50056
Tyrosine specific protein phosphatases family profile.
MTMR2_HUMAN
386-433
1
A:386-433
3
TYR_PHOSPHATASE_1
PS00383
Tyrosine specific protein phosphatases active site.
MTMR2_HUMAN
415-425
1
A:415-425
[
close PROSITE info
]
Exons
(12, 12)
Info
All Exons
Exon 1.11c (A:73-88)
Exon 1.12b (A:88-119)
Exon 1.13c (A:120-156)
Exon 1.14 (A:157-190)
Exon 1.15 (A:191-218)
Exon 1.16b (A:219-268)
Exon 1.17 (A:269-331)
Exon 1.18 (A:332-393)
Exon 1.19 (A:394-462)
Exon 1.20 (A:463-493)
Exon 1.21 (A:494-531)
Exon 1.22 (A:532-585)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.7/1.11c
02: Boundary 1.11c/1.12b
03: Boundary 1.12b/1.13c
04: Boundary 1.13c/1.14
05: Boundary 1.14/1.15
06: Boundary 1.15/1.16b
07: Boundary 1.16b/1.17
08: Boundary 1.17/1.18
09: Boundary 1.18/1.19
10: Boundary 1.19/1.20
11: Boundary 1.20/1.21
12: Boundary 1.21/1.22
13: Boundary 1.22/1.23d
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3a
ENST00000346299
3a
ENSE00001894742
chr11:
95657459-95657039
421
MTMR2_HUMAN
1-27
27
0
-
-
1.7
ENST00000346299
7
ENSE00001698940
chr11:
95621425-95621320
106
MTMR2_HUMAN
27-62
36
0
-
-
1.11c
ENST00000346299
11c
ENSE00001729203
chr11:
95598840-95598765
76
MTMR2_HUMAN
63-88
26
1
A:73-88
16
1.12b
ENST00000346299
12b
ENSE00001099211
chr11:
95595530-95595436
95
MTMR2_HUMAN
88-119
32
1
A:88-119
32
1.13c
ENST00000346299
13c
ENSE00001099206
chr11:
95595266-95595156
111
MTMR2_HUMAN
120-156
37
1
A:120-156
37
1.14
ENST00000346299
14
ENSE00001099217
chr11:
95591796-95591695
102
MTMR2_HUMAN
157-190
34
1
A:157-190
34
1.15
ENST00000346299
15
ENSE00001099204
chr11:
95590799-95590716
84
MTMR2_HUMAN
191-218
28
1
A:191-218
28
1.16b
ENST00000346299
16b
ENSE00001099224
chr11:
95583913-95583764
150
MTMR2_HUMAN
219-268
50
1
A:219-268
50
1.17
ENST00000346299
17
ENSE00001099221
chr11:
95583026-95582838
189
MTMR2_HUMAN
269-331
63
1
A:269-331
63
1.18
ENST00000346299
18
ENSE00001800236
chr11:
95581063-95580878
186
MTMR2_HUMAN
332-393
62
1
A:332-393
62
1.19
ENST00000346299
19
ENSE00001099218
chr11:
95578323-95578117
207
MTMR2_HUMAN
394-462
69
1
A:394-462
69
1.20
ENST00000346299
20
ENSE00001099223
chr11:
95574873-95574781
93
MTMR2_HUMAN
463-493
31
1
A:463-493
31
1.21
ENST00000346299
21
ENSE00001099215
chr11:
95571371-95571258
114
MTMR2_HUMAN
494-531
38
1
A:494-531
38
1.22
ENST00000346299
22
ENSE00001099209
chr11:
95569488-95569312
177
MTMR2_HUMAN
532-590
59
1
A:532-585
54
1.23d
ENST00000346299
23d
ENSE00001121601
chr11:
95568615-95566046
2570
MTMR2_HUMAN
591-643
53
0
-
-
[
close EXON info
]
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1zsqa1 (A:73-198)
2a: SCOP_d1zsqa2 (A:199-585)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
PH domain-like barrel
(258)
Superfamily
:
PH domain-like
(257)
Family
:
GRAM domain
(4)
Protein domain
:
Myotubularin-related protein 2, N-terminal domain
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d1zsqa1
A:73-198
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
(Phosphotyrosine protein) phosphatases II
(296)
Superfamily
:
(Phosphotyrosine protein) phosphatases II
(296)
Family
:
Myotubularin-like phosphatases
(4)
Protein domain
:
Myotubularin-related protein 2, C-terminal domain
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
2a
d1zsqa2
A:199-585
[
close SCOP info
]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1zsqA01 (A:83-183)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
PH-domain like
(150)
Homologous Superfamily
:
Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)
(147)
Human (Homo sapiens)
(85)
1a
1zsqA01
A:83-183
[
close CATH info
]
Pfam Domains
(3, 3)
Info
all PFAM domains
1a: PFAM_GRAM_1zsqA01 (A:73-139)
2a: PFAM_Y_phosphatase_m_1zsqA02 (A:411-465)
3a: PFAM_Myotub_related_1zsqA03 (A:234-351)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
PH
(111)
Family
:
GRAM
(4)
Homo sapiens (Human)
(4)
1a
GRAM-1zsqA01
A:73-139
Clan
:
Phosphatase
(121)
Family
:
Y_phosphatase_m
(5)
Homo sapiens (Human)
(5)
2a
Y_phosphatase_m-1zsqA02
A:411-465
Clan
:
no clan defined [family: Myotub-related]
(5)
Family
:
Myotub-related
(5)
Homo sapiens (Human)
(5)
3a
Myotub-related-1zsqA03
A:234-351
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (101 KB)
Header - Asym.Unit
Biol.Unit 1 (95 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1ZSQ
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
