PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1ZSH
Asym. Unit
Info
Asym.Unit (62 KB)
Biol.Unit 1 (57 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF BOVINE ARRESTIN-2 IN COMPLEX WITH INOSITOL HEXAKISPHOSPHATE (IP6)
Authors
:
S. K. Milano, Y. M. Kim, F. P. Stefano, J. L. Benovic, C. Brenner
Date
:
24 May 05 (Deposition) - 31 Jan 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Nonvisual Arrestins, Beta-Arrestins, Signal Transduction, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. K. Milano, Y. M. Kim, F. P. Stefano, J. L. Benovic, C. Brenner
Nonvisual Arrestin Oligomerization And Cellular Localization Are Regulated By Inositol Hexakisphosphate Binding
J. Biol. Chem. V. 281 9812 2006
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 2)
Info
All Hetero Components
1a: INOSITOL HEXAKISPHOSPHATE (IHPa)
2a: MAGNESIUM ION (MGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
IHP
1
Ligand/Ion
INOSITOL HEXAKISPHOSPHATE
2
MG
1
Ligand/Ion
MAGNESIUM ION
[
close Hetero Component info
]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PRO A:175 , GLU A:176 , TYR A:209
BINDING SITE FOR RESIDUE MG A 701
2
AC2
SOFTWARE
LYS A:157 , LYS A:160 , ARG A:161 , ARG A:236 , LYS A:250 , MET A:255 , LYS A:324 , LYS A:326 , HOH A:782 , HOH A:787
BINDING SITE FOR RESIDUE IHP A 601
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ARRESTINS (A:61-79)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ARRESTINS
PS00295
Arrestins signature.
ARRB1_BOVIN
61-79
1
A:61-79
[
close PROSITE info
]
Exons
(15, 15)
Info
All Exons
Exon 1.1 (A:6-7)
Exon 1.3b (A:7-17)
Exon 1.4 (A:18-38)
Exon 1.5 (A:38-53)
Exon 1.6 (A:53-118)
Exon 1.7 (A:119-138)
Exon 1.8 (A:139-161)
Exon 1.9 (A:161-206)
Exon 1.10 (A:207-235)
Exon 1.11 (A:235-259)
Exon 1.12 (A:259-305)
Exon 1.13 (A:305-330)
Exon 1.14 (A:340-341)
Exon 1.15 (A:341-355)
Exon 1.17 (A:385-397)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.3b
03: Boundary 1.3b/1.4
04: Boundary 1.4/1.5
05: Boundary 1.5/1.6
06: Boundary 1.6/1.7
07: Boundary 1.7/1.8
08: Boundary 1.8/1.9
09: Boundary 1.9/1.10
10: Boundary 1.10/1.11
11: Boundary 1.11/1.12
12: Boundary 1.12/1.13
13: Boundary 1.13/1.14
14: Boundary 1.14/1.15
15: Boundary 1.15/1.16
16: Boundary 1.16/1.17
17: Boundary 1.17/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000027296
1
ENSBTAE00000306942
chr15:
54119996-54119884
113
ARRB1_BOVIN
1-7
7
1
A:6-7
2
1.3b
ENSBTAT00000027296
3b
ENSBTAE00000306939
chr15:
54069390-54069360
31
ARRB1_BOVIN
7-17
11
1
A:7-17
11
1.4
ENSBTAT00000027296
4
ENSBTAE00000222465
chr15:
54067563-54067503
61
ARRB1_BOVIN
18-38
21
1
A:18-38
21
1.5
ENSBTAT00000027296
5
ENSBTAE00000222466
chr15:
54064217-54064173
45
ARRB1_BOVIN
38-53
16
1
A:38-53
16
1.6
ENSBTAT00000027296
6
ENSBTAE00000222467
chr15:
54063453-54063257
197
ARRB1_BOVIN
53-118
66
1
A:53-118
66
1.7
ENSBTAT00000027296
7
ENSBTAE00000222468
chr15:
54061953-54061894
60
ARRB1_BOVIN
119-138
20
1
A:119-138
20
1.8
ENSBTAT00000027296
8
ENSBTAE00000222469
chr15:
54061081-54061014
68
ARRB1_BOVIN
139-161
23
1
A:139-161
23
1.9
ENSBTAT00000027296
9
ENSBTAE00000389371
chr15:
54057878-54057743
136
ARRB1_BOVIN
161-206
46
1
A:161-206
46
1.10
ENSBTAT00000027296
10
ENSBTAE00000222471
chr15:
54056682-54056598
85
ARRB1_BOVIN
207-235
29
1
A:207-235
29
1.11
ENSBTAT00000027296
11
ENSBTAE00000306930
chr15:
54056171-54056099
73
ARRB1_BOVIN
235-259
25
1
A:235-259
25
1.12
ENSBTAT00000027296
12
ENSBTAE00000222473
chr15:
54055150-54055013
138
ARRB1_BOVIN
259-305
47
1
A:259-305
47
1.13
ENSBTAT00000027296
13
ENSBTAE00000231666
chr15:
54053859-54053776
84
ARRB1_BOVIN
305-333
29
1
A:305-330
26
1.14
ENSBTAT00000027296
14
ENSBTAE00000387453
chr15:
54051673-54051650
24
ARRB1_BOVIN
333-341
9
1
A:340-341
2
1.15
ENSBTAT00000027296
15
ENSBTAE00000222478
chr15:
54049468-54049398
71
ARRB1_BOVIN
341-365
25
1
A:341-355
15
1.16
ENSBTAT00000027296
16
ENSBTAE00000222479
chr15:
54048603-54048552
52
ARRB1_BOVIN
365-382
18
0
-
-
1.17
ENSBTAT00000027296
17
ENSBTAE00000222480
chr15:
54047228-54046525
704
ARRB1_BOVIN
382-418
37
1
A:385-397
13
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1zsha1 (A:6-175)
1b: SCOP_d1zsha2 (A:176-397)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
Arrestin/Vps26-like
(13)
Protein domain
:
Arrestin
(9)
Cow (Bos taurus), beta-arrestin 1 [TaxId: 9913]
(6)
1a
d1zsha1
A:6-175
1b
d1zsha2
A:176-397
[
close SCOP info
]
CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1zshA02 (A:179-386)
2a: CATH_1zshA01 (A:7-176)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.640, no name defined]
(10)
Cattle (Bos taurus)
(7)
1a
1zshA02
A:179-386
Homologous Superfamily
:
[code=2.60.40.840, no name defined]
(10)
Cattle (Bos taurus)
(7)
2a
1zshA01
A:7-176
[
close CATH info
]
Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Arrestin_C_1zshA01 (A:193-355)
2a: PFAM_Arrestin_N_1zshA02 (A:18-174)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Arrestin_N-like
(9)
Family
:
Arrestin_C
(5)
Bos taurus (Bovine)
(4)
1a
Arrestin_C-1zshA01
A:193-355
Family
:
Arrestin_N
(5)
Bos taurus (Bovine)
(4)
2a
Arrestin_N-1zshA02
A:18-174
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (62 KB)
Header - Asym.Unit
Biol.Unit 1 (57 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1ZSH
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help