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1ZSD
Asym. Unit
Info
Asym.Unit (77 KB)
Biol.Unit 1 (73 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HLA-B*3501 PRESENTING AN 11-MER EBV ANTIGEN EPLPQGQLTAY
Authors
:
J. J. Miles, D. Elhassen, N. A. Borg, S. L. Silins, F. E. Tynan, J. M. Burrows, A. W. Purcell, L. Kjer-Nielsen, J. Rossjohn, S. R. Burrows, J. Mccluskey
Date
:
24 May 05 (Deposition) - 07 Jun 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Human Leukocyte Antigen, Major Histocompatibility Complex I, B35, B*3501, Bulged Peptide, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. J. Miles, D. Elhassen, N. A. Borg, S. L. Silins, F. E. Tynan, J. M. Burrows, A. W. Purcell, L. Kjer-Nielsen, J. Rossjohn, S. R. Burrows, J. Mccluskey, D. El-Hassen
Ctl Recognition Of A Bulged Viral Peptide Involves Biased Tcr Selection.
J. Immunol. V. 175 3826 2005
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Label:
Sorry, no Info available
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]
Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
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]
SAPs(SNPs)/Variants
(14, 14)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_016393 (G16V, chain A, )
02: VAR_016394 (A24S, chain A, )
03: VAR_016395 (T45E, chain A, )
04: VAR_016396 (N63E, chain A, )
05: VAR_016397 (F67S, chain A, )
06: VAR_016398 (Y74D, chain A, )
07: VAR_016399 (G83D, chain A, )
08: VAR_016401 (R97S, chain A, )
09: VAR_016402 (L103V, chain A, )
10: VAR_016403 (L109F, chain A, )
11: VAR_016404 (D114N, chain A, )
12: VAR_016405 (S116F, chain A, )
13: VAR_016406 (S116Y, chain A, )
14: VAR_016407 (L156R, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_016393
G
40
V
1B35_HUMAN
Polymorphism
---
A
G
16
V
02
UniProt
VAR_016394
A
48
S
1B35_HUMAN
Polymorphism
---
A
A
24
S
03
UniProt
VAR_016395
T
69
E
1B35_HUMAN
Polymorphism
---
A
T
45
E
04
UniProt
VAR_016396
N
87
E
1B35_HUMAN
Polymorphism
---
A
N
63
E
05
UniProt
VAR_016397
F
91
S
1B35_HUMAN
Polymorphism
---
A
F
67
S
06
UniProt
VAR_016398
Y
98
D
1B35_HUMAN
Polymorphism
---
A
Y
74
D
07
UniProt
VAR_016399
G
107
D
1B35_HUMAN
Polymorphism
---
A
G
83
D
08
UniProt
VAR_016401
R
121
S
1B35_HUMAN
Polymorphism
---
A
R
97
S
09
UniProt
VAR_016402
L
127
V
1B35_HUMAN
Polymorphism
---
A
L
103
V
10
UniProt
VAR_016403
L
133
F
1B35_HUMAN
Polymorphism
---
A
L
109
F
11
UniProt
VAR_016404
D
138
N
1B35_HUMAN
Polymorphism
---
A
D
114
N
12
UniProt
VAR_016405
S
140
F
1B35_HUMAN
Polymorphism
---
A
S
116
F
13
UniProt
VAR_016406
S
140
Y
1B35_HUMAN
Polymorphism
---
A
S
116
Y
14
UniProt
VAR_016407
L
180
R
1B35_HUMAN
Polymorphism
---
A
L
156
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (B:78-84,A:257-263)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
B2MG_HUMAN
98-104
1
B:78-84
1B35_HUMAN
281-287
1
A:257-263
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Exons
(5, 5)
Info
All Exons
Exon 1.1b (A:1-1)
Exon 1.1g (A:1-91)
Exon 1.1k (A:91-183)
Exon 1.2e (A:183-275)
Exon 1.3c (A:275-276)
View:
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All Exon Boundaries
1: Boundary -/1.1b
2: Boundary 1.1b/1.1g
3: Boundary 1.1g/1.1k
4: Boundary 1.1k/1.2e
5: Boundary 1.2e/1.3c
6: Boundary 1.3c/1.4d
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000359635
1b
ENSE00001927439
HSCHR6_MHC_QBL:31315097-31314982
116
1B35_HUMAN
1-25
25
1
A:1-1
1
1.1g
ENST00000359635
1g
ENSE00001696140
HSCHR6_MHC_QBL:31314853-31314584
270
1B35_HUMAN
25-115
91
1
A:1-91
91
1.1k
ENST00000359635
1k
ENSE00001735604
HSCHR6_MHC_QBL:31314337-31314062
276
1B35_HUMAN
115-207
93
1
A:91-183
93
1.2e
ENST00000359635
2e
ENSE00001758727
HSCHR6_MHC_QBL:31313489-31313214
276
1B35_HUMAN
207-299
93
1
A:183-275
93
1.3c
ENST00000359635
3c
ENSE00001709629
HSCHR6_MHC_QBL:31313109-31312993
117
1B35_HUMAN
299-338
40
1
A:275-276
2
1.4d
ENST00000359635
4d
ENSE00001622787
HSCHR6_MHC_QBL:31312551-31312519
33
1B35_HUMAN
338-349
12
0
-
-
1.4e
ENST00000359635
4e
ENSE00001685892
HSCHR6_MHC_QBL:31312412-31312365
48
1B35_HUMAN
349-362
14
0
-
-
1.5b
ENST00000359635
5b
ENSE00001661687
HSCHR6_MHC_QBL:31312192-31311768
425
1B35_HUMAN
-
0
0
-
-
[
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]
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d1zsdb_ (B:)
2a: SCOP_d1zsda1 (A:182-276)
3a: SCOP_d1zsda2 (A:1-181)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
beta2-microglobulin
(530)
Human (Homo sapiens) [TaxId: 9606]
(350)
1a
d1zsdb_
B:
Protein domain
:
Class I MHC, alpha-3 domain
(293)
Human (Homo sapiens) [TaxId: 9606]
(187)
2a
d1zsda1
A:182-276
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
MHC antigen-recognition domain
(585)
Superfamily
:
MHC antigen-recognition domain
(585)
Family
:
MHC antigen-recognition domain
(533)
Protein domain
:
Class I MHC, alpha-1 and alpha-2 domains
(294)
Human (Homo sapiens), HLA-B35 [TaxId: 9606]
(12)
3a
d1zsda2
A:1-181
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CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_1zsdA01 (A:1-181)
2a: CATH_1zsdB00 (B:1-99)
2b: CATH_1zsdA02 (A:182-272)
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Classes
(
)
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)
Architectures
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1
(402)
Homologous Superfamily
:
Murine Class I Major Histocompatibility Complex, H2-DB, subunit A, domain 1
(400)
Human (Homo sapiens)
(249)
1a
1zsdA01
A:1-181
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
2a
1zsdB00
B:1-99
2b
1zsdA02
A:182-272
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Pfam Domains
(2, 3)
Info
all PFAM domains
1a: PFAM_C1_set_1zsdA01 (A:186-271)
1b: PFAM_C1_set_1zsdB01 (B:11-92)
2a: PFAM_MHC_I_1zsdA02 (A:1-179)
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Clans
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(
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Organisms
(
)
(
)
Clan
:
Ig
(577)
Family
:
C1-set
(338)
Homo sapiens (Human)
(218)
1a
C1-set-1zsdA01
A:186-271
1b
C1-set-1zsdB01
B:11-92
Clan
:
MHC
(252)
Family
:
MHC_I
(210)
Homo sapiens (Human)
(144)
2a
MHC_I-1zsdA02
A:1-179
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