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1ZS8
Asym. Unit
Info
Asym.Unit (288 KB)
Biol.Unit 1 (60 KB)
Biol.Unit 2 (60 KB)
Biol.Unit 3 (60 KB)
Biol.Unit 4 (60 KB)
Biol.Unit 5 (60 KB)
Biol.Unit 6 (280 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE MURINE MHC CLASS IB MOLECULE M10.5
Authors
:
R. Olson, K. E. Huey-Tubman, C. Dulac, P. J. Bjorkman
Date
:
22 Jul 05 (Deposition) - 26 Jul 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Biol. Unit 5: I,J (1x)
Biol. Unit 6: A,B,C,D,E,F,G,H,I,J (1x)
Keywords
:
Major Histocompatibility Complex, Mhc, Vomeronasal Organ, Vno, V2R Receptors, Pheromone Receptors, Beta-2-Microglobulin, Peptides, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Olson, K. E. Huey-Tubman, C. Dulac, P. J. Bjorkman
Structure Of A Pheromone Receptor-Associated Mhc Molecule With An Open And Empty Groove.
Plos Biol. V. 3 E257 2005
[
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Hetero Components
(1, 5)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
1c: N-ACETYL-D-GLUCOSAMINE (NAGc)
1d: N-ACETYL-D-GLUCOSAMINE (NAGd)
1e: N-ACETYL-D-GLUCOSAMINE (NAGe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAG
5
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:222
BINDING SITE FOR RESIDUE NAG A 301
2
AC2
SOFTWARE
ASN C:222
BINDING SITE FOR RESIDUE NAG C 302
3
AC3
SOFTWARE
ASN E:222
BINDING SITE FOR RESIDUE NAG E 303
4
AC4
SOFTWARE
ASN G:222
BINDING SITE FOR RESIDUE NAG G 304
5
AC5
SOFTWARE
ASN I:222
BINDING SITE FOR RESIDUE NAG I 305
[
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]
SAPs(SNPs)/Variants
(1, 5)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_076691 (D76N, chain B/D/F/H/J, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_076691
D
96
N
B2MG_HUMAN
Disease (AMYL8)
398122820
B/D/F/H/J
D
76
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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]
PROSITE Patterns/Profiles
(1, 5)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (B:78-84,D:78-84,F:78-84,H:78-84,J:...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
B2MG_HUMAN
98-104
5
B:78-84
D:78-84
F:78-84
H:78-84
J:78-84
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Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 15)
Info
All SCOP Domains
1a: SCOP_d1zs8b_ (B:)
1b: SCOP_d1zs8d_ (D:)
1c: SCOP_d1zs8f_ (F:)
1d: SCOP_d1zs8h_ (H:)
1e: SCOP_d1zs8j_ (J:)
2a: SCOP_d1zs8a1 (A:181-274)
2b: SCOP_d1zs8c1 (C:181-274)
2c: SCOP_d1zs8e1 (E:181-274)
2d: SCOP_d1zs8g1 (G:181-274)
2e: SCOP_d1zs8i1 (I:181-274)
3a: SCOP_d1zs8a2 (A:1-180)
3b: SCOP_d1zs8c2 (C:1-180)
3c: SCOP_d1zs8e2 (E:1-180)
3d: SCOP_d1zs8g2 (G:1-180)
3e: SCOP_d1zs8i2 (I:1-180)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
beta2-microglobulin
(530)
Human (Homo sapiens) [TaxId: 9606]
(350)
1a
d1zs8b_
B:
1b
d1zs8d_
D:
1c
d1zs8f_
F:
1d
d1zs8h_
H:
1e
d1zs8j_
J:
Protein domain
:
Class I MHC, alpha-3 domain
(293)
Mouse (Mus musculus) [TaxId: 10090]
(102)
2a
d1zs8a1
A:181-274
2b
d1zs8c1
C:181-274
2c
d1zs8e1
E:181-274
2d
d1zs8g1
G:181-274
2e
d1zs8i1
I:181-274
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
MHC antigen-recognition domain
(585)
Superfamily
:
MHC antigen-recognition domain
(585)
Family
:
MHC antigen-recognition domain
(533)
Protein domain
:
Class I MHC, alpha-1 and alpha-2 domains
(294)
Mouse (Mus musculus), H-2M10 [TaxId: 10090]
(2)
3a
d1zs8a2
A:1-180
3b
d1zs8c2
C:1-180
3c
d1zs8e2
E:1-180
3d
d1zs8g2
G:1-180
3e
d1zs8i2
I:1-180
[
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]
CATH Domains
(2, 15)
Info
all CATH domains
1a: CATH_1zs8A01 (A:1-180)
1b: CATH_1zs8C01 (C:1-180)
1c: CATH_1zs8E01 (E:1-180)
1d: CATH_1zs8G01 (G:1-180)
1e: CATH_1zs8I01 (I:1-180)
2a: CATH_1zs8B00 (B:1-99)
2b: CATH_1zs8H00 (H:1-99)
2c: CATH_1zs8A02 (A:181-274)
2d: CATH_1zs8C02 (C:181-274)
2e: CATH_1zs8E02 (E:181-274)
2f: CATH_1zs8G02 (G:181-274)
2g: CATH_1zs8I02 (I:181-274)
2h: CATH_1zs8J00 (J:1-99)
2i: CATH_1zs8D00 (D:1-99)
2j: CATH_1zs8F00 (F:1-99)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1
(402)
Homologous Superfamily
:
Murine Class I Major Histocompatibility Complex, H2-DB, subunit A, domain 1
(400)
House mouse (Mus musculus)
(92)
1a
1zs8A01
A:1-180
1b
1zs8C01
C:1-180
1c
1zs8E01
E:1-180
1d
1zs8G01
G:1-180
1e
1zs8I01
I:1-180
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
House mouse (Mus musculus)
(616)
2a
1zs8B00
B:1-99
2b
1zs8H00
H:1-99
2c
1zs8A02
A:181-274
2d
1zs8C02
C:181-274
2e
1zs8E02
E:181-274
2f
1zs8G02
G:181-274
2g
1zs8I02
I:181-274
2h
1zs8J00
J:1-99
2i
1zs8D00
D:1-99
2j
1zs8F00
F:1-99
[
close CATH info
]
Pfam Domains
(3, 15)
Info
all PFAM domains
1a: PFAM_C1_set_1zs8J01 (J:11-92)
1b: PFAM_C1_set_1zs8J02 (J:11-92)
1c: PFAM_C1_set_1zs8J03 (J:11-92)
1d: PFAM_C1_set_1zs8J04 (J:11-92)
1e: PFAM_C1_set_1zs8J05 (J:11-92)
2a: PFAM_C1_set_1zs8I01 (I:187-270)
2b: PFAM_C1_set_1zs8I02 (I:187-270)
2c: PFAM_C1_set_1zs8I03 (I:187-270)
2d: PFAM_C1_set_1zs8I04 (I:187-270)
2e: PFAM_C1_set_1zs8I05 (I:187-270)
3a: PFAM_MHC_I_1zs8I06 (I:1-178)
3b: PFAM_MHC_I_1zs8I07 (I:1-178)
3c: PFAM_MHC_I_1zs8I08 (I:1-178)
3d: PFAM_MHC_I_1zs8I09 (I:1-178)
3e: PFAM_MHC_I_1zs8I10 (I:1-178)
View:
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Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Ig
(577)
Family
:
C1-set
(338)
Homo sapiens (Human)
(218)
1a
C1-set-1zs8J01
J:11-92
1b
C1-set-1zs8J02
J:11-92
1c
C1-set-1zs8J03
J:11-92
1d
C1-set-1zs8J04
J:11-92
1e
C1-set-1zs8J05
J:11-92
Mus musculus (Mouse)
(118)
2a
C1-set-1zs8I01
I:187-270
2b
C1-set-1zs8I02
I:187-270
2c
C1-set-1zs8I03
I:187-270
2d
C1-set-1zs8I04
I:187-270
2e
C1-set-1zs8I05
I:187-270
Clan
:
MHC
(252)
Family
:
MHC_I
(210)
Mus musculus (Mouse)
(60)
3a
MHC_I-1zs8I06
I:1-178
3b
MHC_I-1zs8I07
I:1-178
3c
MHC_I-1zs8I08
I:1-178
3d
MHC_I-1zs8I09
I:1-178
3e
MHC_I-1zs8I10
I:1-178
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Asym.Unit (288 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
Biol.Unit 2 (60 KB)
Header - Biol.Unit 2
Biol.Unit 3 (60 KB)
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