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1ZQ9
Asym. Unit
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Asym.Unit (111 KB)
Biol.Unit 1 (106 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN DIMETHYLADENOSINE TRANSFERASE
Authors
:
A. Dong, H. Wu, H. Zeng, P. Loppnau, M. Sundstrom, C. Arrowsmith, A. Edwards, A. Bochkarev, A. Plotnikov, Structural Genomics Consortium (Sgc)
Date
:
18 May 05 (Deposition) - 31 May 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Sgc, Dimethyladenosine Transferase, Structural Genomics, Structural Genomics Consortium
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Wu, A. Dong, H. Zeng, P. Loppnau, M. Sundstrom, C. Arrowsmith, A. Edwards, A. Bochkarev, A. Plotnikov
Crystal Structure Of Human Dimethyladenosine Transferase With Sam
To Be Published
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: S-ADENOSYLMETHIONINE (SAMa)
1b: S-ADENOSYLMETHIONINE (SAMb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SAM
2
Ligand/Ion
S-ADENOSYLMETHIONINE
[
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]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:36 , HIS A:37 , ILE A:38 , GLY A:64 , GLY A:66 , CYS A:84 , GLU A:85 , LEU A:86 , LEU A:90 , GLY A:112 , ASP A:113 , VAL A:114 , ASN A:128 , LEU A:129 , PRO A:130 , MET A:154 , PHE A:196 , SER A:204 , HOH A:4166 , HOH A:4236 , HOH A:4282 , HOH A:4329
BINDING SITE FOR RESIDUE SAM A 4000
2
AC2
SOFTWARE
HIS B:37 , GLY B:64 , GLY B:66 , CYS B:84 , GLU B:85 , LEU B:86 , LEU B:90 , GLY B:112 , ASP B:113 , VAL B:114 , ASN B:128 , LEU B:129 , PRO B:130 , TYR B:131 , ILE B:133 , PHE B:196 , HOH B:4125 , HOH B:4166 , HOH B:4189 , HOH B:4208 , HOH B:4394
BINDING SITE FOR RESIDUE SAM B 4001
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: RRNA_A_DIMETH (A:60-87,B:60-87)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RRNA_A_DIMETH
PS01131
Ribosomal RNA adenine dimethylases signature.
DIM1_HUMAN
60-87
2
A:60-87
B:60-87
[
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Exons
(11, 22)
Info
All Exons
Exon 1.2 (A:36-51 | B:36-51)
Exon 1.3 (A:52-80 | B:52-80)
Exon 1.4 (A:81-101 | B:81-101)
Exon 1.5 (A:101-132 | B:101-132)
Exon 1.6a (A:133-149 | B:133-149)
Exon 1.7 (A:149-190 | B:149-190)
Exon 1.8 (A:191-221 | B:191-221)
Exon 1.9a (A:222-243 | B:222-243)
Exon 1.10b (A:243-264 | B:243-264)
Exon 1.12b (A:265-300 | B:265-300)
Exon 1.13b (A:300-313 | B:300-313)
View:
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All Exon Boundaries
01: Boundary 1.1b/1.2
02: Boundary 1.2/1.3
03: Boundary 1.3/1.4
04: Boundary 1.4/1.5
05: Boundary 1.5/1.6a
06: Boundary 1.6a/1.7
07: Boundary 1.7/1.8
08: Boundary 1.8/1.9a
09: Boundary 1.9a/1.10b
10: Boundary 1.10b/1.12b
11: Boundary 1.12b/1.13b
12: Boundary 1.13b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000199320
1b
ENSE00000837034
chr5:
61699760-61699521
240
DIM1_HUMAN
1-27
27
0
-
-
1.2
ENST00000199320
2
ENSE00000748423
chr5:
61699173-61699100
74
DIM1_HUMAN
27-51
25
2
A:36-51
B:36-51
16
16
1.3
ENST00000199320
3
ENSE00000748421
chr5:
61697949-61697863
87
DIM1_HUMAN
52-80
29
2
A:52-80
B:52-80
29
29
1.4
ENST00000199320
4
ENSE00000837030
chr5:
61694708-61694647
62
DIM1_HUMAN
81-101
21
2
A:81-101
B:81-101
21
21
1.5
ENST00000199320
5
ENSE00000549149
chr5:
61694566-61694473
94
DIM1_HUMAN
101-132
32
2
A:101-132
B:101-132
32
32
1.6a
ENST00000199320
6a
ENSE00000837028
chr5:
61694387-61694338
50
DIM1_HUMAN
133-149
17
2
A:133-149
B:133-149
17
17
1.7
ENST00000199320
7
ENSE00000837027
chr5:
61690434-61690311
124
DIM1_HUMAN
149-190
42
2
A:149-190
B:149-190
42
42
1.8
ENST00000199320
8
ENSE00000837026
chr5:
61689874-61689782
93
DIM1_HUMAN
191-221
31
2
A:191-221
B:191-221
31
31
1.9a
ENST00000199320
9a
ENSE00000837025
chr5:
61688817-61688753
65
DIM1_HUMAN
222-243
22
2
A:222-243
B:222-243
22
22
1.10b
ENST00000199320
10b
ENSE00000837024
chr5:
61688061-61687998
64
DIM1_HUMAN
243-264
22
2
A:243-264
B:243-264
22
22
1.12b
ENST00000199320
12b
ENSE00001746643
chr5:
61686809-61686703
107
DIM1_HUMAN
265-300
36
2
A:265-300
B:265-300
36
36
1.13b
ENST00000199320
13b
ENSE00000837020
chr5:
61684879-61683081
1799
DIM1_HUMAN
300-313
14
2
A:300-313
B:300-313
14
14
[
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1zq9b_ (B:)
2a: SCOP_d1zq9a1 (A:36-313)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Superfamily
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Family
:
rRNA adenine dimethylase-like
(11)
Protein domain
:
automated matches
(2)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1zq9b_
B:
Protein domain
:
Probable dimethyladenosine transferase
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
2a
d1zq9a1
A:36-313
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (111 KB)
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