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1ZOQ
Asym. Unit
Info
Asym.Unit (88 KB)
Biol.Unit 1 (44 KB)
Biol.Unit 2 (43 KB)
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(1)
Title
:
IRF3-CBP COMPLEX
Authors
:
B. Qin, K. Lin
Date
:
13 May 05 (Deposition) - 21 Mar 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.37
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Transcription Regulation, Transferase, Transcription/Transferase Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Y. Qin, C. Liu, H. Srinath, S. S. Lam, J. J. Correia, R. Derynck, K. Lin
Crystal Structure Of Irf-3 In Complex With Cbp.
Structure V. 13 1269 2005
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Label:
Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
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]
SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_011902 (E377K, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_011902
E
377
K
IRF3_HUMAN
Polymorphism
1049486
A/B
E
377
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(5, 10)
Info
All Exons
Exon 1.31 (C:2065-2111 | D:2065-2111)
Exon 2.5 (A:196-201 | B:196-201)
Exon 2.6 (A:201-328 | B:201-328)
Exon 2.7b (A:328-366 | B:328-366)
Exon 2.8b (A:367-386 | B:367-386)
View:
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All Exon Boundaries
1: Boundary 1.30/1.31
2: Boundary 1.31/-
3: Boundary 2.4/2.5
4: Boundary 2.5/2.6
5: Boundary 2.6/2.7b
6: Boundary 2.7b/2.8b
7: Boundary 2.8b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000262367
1a
ENSE00001871332
chr16:
3930722-3929833
890
CBP_HUMAN
1-29
29
0
-
-
1.2
ENST00000262367
2
ENSE00001789080
chr16:
3901010-3900298
713
CBP_HUMAN
29-266
238
0
-
-
1.3
ENST00000262367
3
ENSE00001788865
chr16:
3860780-3860604
177
CBP_HUMAN
267-325
59
0
-
-
1.4
ENST00000262367
4
ENSE00001744566
chr16:
3843627-3843387
241
CBP_HUMAN
326-406
81
0
-
-
1.5
ENST00000262367
5
ENSE00001693899
chr16:
3842095-3841982
114
CBP_HUMAN
406-444
39
0
-
-
1.6
ENST00000262367
6
ENSE00001692816
chr16:
3832927-3832685
243
CBP_HUMAN
444-525
82
0
-
-
1.7
ENST00000262367
7
ENSE00001608958
chr16:
3831307-3831205
103
CBP_HUMAN
525-559
35
0
-
-
1.8
ENST00000262367
8
ENSE00001732416
chr16:
3830879-3830733
147
CBP_HUMAN
559-608
50
0
-
-
1.9
ENST00000262367
9
ENSE00001656158
chr16:
3828818-3828701
118
CBP_HUMAN
608-647
40
0
-
-
1.10
ENST00000262367
10
ENSE00001678454
chr16:
3828183-3828012
172
CBP_HUMAN
648-705
58
0
-
-
1.11
ENST00000262367
11
ENSE00001615007
chr16:
3827658-3827614
45
CBP_HUMAN
705-720
16
0
-
-
1.12
ENST00000262367
12
ENSE00001733259
chr16:
3824694-3824570
125
CBP_HUMAN
720-761
42
0
-
-
1.13
ENST00000262367
13
ENSE00001638447
chr16:
3823931-3823752
180
CBP_HUMAN
762-821
60
0
-
-
1.14
ENST00000262367
14
ENSE00001594624
chr16:
3820987-3820571
417
CBP_HUMAN
822-960
139
0
-
-
1.15
ENST00000262367
15
ENSE00001625302
chr16:
3819354-3819175
180
CBP_HUMAN
961-1020
60
0
-
-
1.16
ENST00000262367
16
ENSE00001784635
chr16:
3817910-3817721
190
CBP_HUMAN
1021-1084
64
0
-
-
1.17
ENST00000262367
17
ENSE00001709420
chr16:
3808973-3808855
119
CBP_HUMAN
1084-1123
40
0
-
-
1.18
ENST00000262367
18
ENSE00001644140
chr16:
3808049-3807810
240
CBP_HUMAN
1124-1203
80
0
-
-
1.19
ENST00000262367
19
ENSE00001699420
chr16:
3807377-3807289
89
CBP_HUMAN
1204-1233
30
0
-
-
1.20
ENST00000262367
20
ENSE00001592013
chr16:
3801807-3801727
81
CBP_HUMAN
1233-1260
28
0
-
-
1.21
ENST00000262367
21
ENSE00001789918
chr16:
3799684-3799628
57
CBP_HUMAN
1260-1279
20
0
-
-
1.22
ENST00000262367
22
ENSE00001670717
chr16:
3795355-3795278
78
CBP_HUMAN
1279-1305
27
0
-
-
1.23
ENST00000262367
23
ENSE00001684253
chr16:
3794962-3794895
68
CBP_HUMAN
1305-1328
24
0
-
-
1.24
ENST00000262367
24
ENSE00001804031
chr16:
3790550-3790400
151
CBP_HUMAN
1328-1378
51
0
-
-
1.25
ENST00000262367
25
ENSE00001623920
chr16:
3789725-3789579
147
CBP_HUMAN
1378-1427
50
0
-
-
1.26
ENST00000262367
26
ENSE00001698951
chr16:
3788673-3788560
114
CBP_HUMAN
1427-1465
39
0
-
-
1.27
ENST00000262367
27
ENSE00000894975
chr16:
3786816-3786651
166
CBP_HUMAN
1465-1520
56
0
-
-
1.28
ENST00000262367
28
ENSE00000894970
chr16:
3786204-3786037
168
CBP_HUMAN
1521-1576
56
0
-
-
1.29
ENST00000262367
29
ENSE00001062588
chr16:
3781938-3781777
162
CBP_HUMAN
1577-1630
54
0
-
-
1.30
ENST00000262367
30
ENSE00000865712
chr16:
3781474-3781193
282
CBP_HUMAN
1631-1724
94
0
-
-
1.31
ENST00000262367
31
ENSE00001292463
chr16:
3779875-3775055
4821
CBP_HUMAN
1725-2442
718
2
C:2065-2111
D:2065-2111
47
47
2.1a
ENST00000377139
1a
ENSE00001741588
chr19:
50169132-50168888
245
IRF3_HUMAN
-
0
0
-
-
2.2
ENST00000377139
2
ENSE00001192374
chr19:
50168103-50167931
173
IRF3_HUMAN
1-55
55
0
-
-
2.3
ENST00000377139
3
ENSE00000720991
chr19:
50166771-50166600
172
IRF3_HUMAN
56-113
58
0
-
-
2.4
ENST00000377139
4
ENSE00001762773
chr19:
50166515-50166445
71
IRF3_HUMAN
113-136
24
0
-
-
2.5
ENST00000377139
5
ENSE00001662781
chr19:
50165874-50165682
193
IRF3_HUMAN
137-201
65
2
A:196-201
B:196-201
6
6
2.6
ENST00000377139
6
ENSE00001759095
chr19:
50165585-50165205
381
IRF3_HUMAN
201-328
128
2
A:201-328
B:201-328
128
128
2.7b
ENST00000377139
7b
ENSE00001699705
chr19:
50164085-50163970
116
IRF3_HUMAN
328-366
39
2
A:328-366
B:328-366
39
39
2.8b
ENST00000377139
8b
ENSE00001707173
chr19:
50163090-50162829
262
IRF3_HUMAN
367-427
61
2
A:367-386
B:367-386
20
20
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1zoqc_ (C:)
1b: SCOP_d1zoqd_ (D:)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Nuclear receptor coactivator interlocking domain
(8)
Superfamily
:
Nuclear receptor coactivator interlocking domain
(8)
Family
:
Nuclear receptor coactivator interlocking domain
(8)
Protein domain
:
automated matches
(4)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1zoqc_
C:
1b
d1zoqd_
D:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1zoqA00 (A:196-386)
1b: CATH_1zoqB00 (B:196-386)
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(
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Tumour Suppressor Smad4
(52)
Homologous Superfamily
:
[code=2.60.200.10, no name defined]
(17)
Human (Homo sapiens)
(15)
1a
1zoqA00
A:196-386
1b
1zoqB00
B:196-386
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_IRF_3_1zoqB01 (B:201-380)
1b: PFAM_IRF_3_1zoqB02 (B:201-380)
2a: PFAM_Creb_binding_1zoqD01 (D:2065-2111)
2b: PFAM_Creb_binding_1zoqD02 (D:2065-2111)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
SMAD-FHA
(27)
Family
:
IRF-3
(1)
Homo sapiens (Human)
(1)
1a
IRF-3-1zoqB01
B:201-380
1b
IRF-3-1zoqB02
B:201-380
Clan
:
no clan defined [family: Creb_binding]
(4)
Family
:
Creb_binding
(4)
Homo sapiens (Human)
(1)
2a
Creb_binding-1zoqD01
D:2065-2111
2b
Creb_binding-1zoqD02
D:2065-2111
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