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1ZO9
Biol. Unit 1
Info
Asym.Unit (186 KB)
Biol.Unit 1 (92 KB)
Biol.Unit 2 (92 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE WILD TYPE HEME DOMAIN OF P450BM-3 WITH N-PALMITOYLMETHIONINE
Authors
:
A. Hegda, B. Chen, D. R. Tomchick, M. Bondlela, D. C. Haines, N. Schaffer M. Machius, S. E. Graham, J. A. Peterson
Date
:
12 May 05 (Deposition) - 01 Aug 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Cytochrome P-450, Wild Type Heme Protein, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Hegde, D. C. Haines, M. Bondlela, B. Chen, N. Schaffer, D. R. Tomchick, M. Machius, H. Nguyen, P. K. Chowdhary, L. Stewart, C. Lopez, J. A. Peterson
Interactions Of Substrates At The Surface Of P450S Can Greatly Enhance Substrate Potency.
Biochemistry V. 46 14010 2007
[
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Hetero Components
(3, 13)
Info
All Hetero Components
1a: N-PALMITOYL-L-METHIONINE (EPMa)
1b: N-PALMITOYL-L-METHIONINE (EPMb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
2l: GLYCEROL (GOLl)
2m: GLYCEROL (GOLm)
2n: GLYCEROL (GOLn)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
4a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
4b: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EPM
1
Ligand/Ion
N-PALMITOYL-L-METHIONINE
2
GOL
11
Ligand/Ion
GLYCEROL
3
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
4
MES
-1
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
[
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC3 (SOFTWARE)
03: AC6 (SOFTWARE)
04: AC7 (SOFTWARE)
05: AC8 (SOFTWARE)
06: BC1 (SOFTWARE)
07: BC2 (SOFTWARE)
08: BC4 (SOFTWARE)
09: BC6 (SOFTWARE)
10: BC7 (SOFTWARE)
11: BC8 (SOFTWARE)
12: BC9 (SOFTWARE)
13: CC1 (SOFTWARE)
14: CC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:69 , LEU A:75 , LEU A:86 , PHE A:87 , TRP A:96 , PHE A:107 , PHE A:261 , ALA A:264 , GLY A:265 , THR A:268 , THR A:269 , THR A:327 , PHE A:331 , PRO A:392 , PHE A:393 , GLY A:394 , ARG A:398 , ALA A:399 , CYS A:400 , ILE A:401 , HOH A:1486 , HOH A:1489 , HOH A:1491 , HOH A:1493 , HOH A:1503 , HOH A:1526 , HOH A:1535
BINDING SITE FOR RESIDUE HEM A 471
02
AC3
SOFTWARE
LEU A:29 , TYR A:51 , SER A:72 , GLN A:73 , ALA A:74 , VAL A:78 , ALA A:82 , LEU A:188 , THR A:260 , PRO A:329 , LEU A:437 , HOH A:1762 , HOH A:1927
BINDING SITE FOR RESIDUE EPM A 1470
03
AC6
SOFTWARE
HOH A:1938 , HIS B:285 , HOH B:1570
BINDING SITE FOR RESIDUE MES B 1491
04
AC7
SOFTWARE
LEU A:455 , GLY A:457 , HOH A:1829
BINDING SITE FOR RESIDUE GOL A 1472
05
AC8
SOFTWARE
GLU A:292 , ALA A:295 , ARG A:296 , HOH A:1787 , HOH A:1836 , HOH A:1986 , LYS B:59 , HOH B:1926
BINDING SITE FOR RESIDUE GOL A 1473
06
BC1
SOFTWARE
ASP A:34 , ARG A:362 , LYS A:364 , VAL A:371 , GLU A:372
BINDING SITE FOR RESIDUE GOL A 1475
07
BC2
SOFTWARE
HOH A:1635 , HOH A:1720 , HOH A:1742 , HOH A:1743 , HOH A:1879 , LYS B:349 , GLY B:350 , HOH B:1972 , HOH B:2001
BINDING SITE FOR RESIDUE GOL A 1476
08
BC4
SOFTWARE
ILE A:220 , LEU A:238 , ASP A:251 , HOH A:1716 , HOH A:1797
BINDING SITE FOR RESIDUE GOL A 1478
09
BC6
SOFTWARE
LYS A:391 , GLY A:394 , ASN A:395 , GLY A:396 , GLN A:403 , HOH A:1554 , HOH A:1964 , HOH A:2012
BINDING SITE FOR RESIDUE GOL A 1480
10
BC7
SOFTWARE
GLU A:143 , PRO A:170 , HOH A:1745 , HOH A:1915 , HOH A:1970
BINDING SITE FOR RESIDUE GOL A 1481
11
BC8
SOFTWARE
ASP A:121 , ARG A:161
BINDING SITE FOR RESIDUE GOL A 1482
12
BC9
SOFTWARE
ASP A:68 , THR A:91 , HIS A:92 , LYS A:336 , HOH A:1623 , HOH A:1734 , HOH A:1886
BINDING SITE FOR RESIDUE GOL A 1483
13
CC1
SOFTWARE
GLN A:55 , LYS A:59 , HOH A:1610 , HOH A:1753 , GLN B:110
BINDING SITE FOR RESIDUE GOL A 1484
14
CC2
SOFTWARE
GLU A:131 , ARG A:132 , HOH A:1992
BINDING SITE FOR RESIDUE GOL A 1485
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: CYTOCHROME_P450 (A:393-402)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTOCHROME_P450
PS00086
Cytochrome P450 cysteine heme-iron ligand signature.
CPXB_BACMB
394-403
1
A:393-402
-
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1zo9a_ (A:)
1b: SCOP_d1zo9b_ (B:)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Cytochrome P450
(480)
Superfamily
:
Cytochrome P450
(480)
Family
:
Cytochrome P450
(323)
Protein domain
:
Cytochrome P450 bm-3
(60)
Bacillus megaterium [TaxId: 1404]
(60)
1a
d1zo9a_
A:
1b
d1zo9b_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1zo9A00 (A:1-458)
1b: CATH_1zo9B00 (B:1-458)
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Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Cytochrome p450
(271)
Homologous Superfamily
:
Cytochrome p450
(271)
Bacillus megaterium. Organism_taxid: 1404.
(20)
1a
1zo9A00
A:1-458
1b
1zo9B00
B:1-458
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Pfam Domains
(0, 0)
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all PFAM domains
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Sorry, no Info available
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Chain A
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (186 KB)
Header - Asym.Unit
Biol.Unit 1 (92 KB)
Header - Biol.Unit 1
Biol.Unit 2 (92 KB)
Header - Biol.Unit 2
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