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1ZO8
Asym. Unit
Info
Asym.Unit (665 KB)
Biol.Unit 1 (170 KB)
Biol.Unit 2 (170 KB)
Biol.Unit 3 (173 KB)
Biol.Unit 4 (170 KB)
Biol.Unit 5 (172 KB)
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(1)
Title
:
X-RAY STRUCTURE OF THE HALOALCOHOL DEHALOGENASE HHEC OF AGROBACTERIUM RADIOBACTER AD1 IN COMPLEX WITH (S)-PARA-NITROSTYRENE OXIDE, WITH A WATER MOLECULE IN THE HALIDE-BINDING SITE
Authors
:
R. M. De Jong, J. J. W. Tiesinga, L. Tang, A. Villa, D. B. Janssen, B. W. Dijkstra
Date
:
12 May 05 (Deposition) - 04 Oct 05 (Release) - 13 May 08 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: M,N (2x)
Biol. Unit 2: A,B,C,D (1x)
Biol. Unit 3: E,F,G,H (1x)
Biol. Unit 4: O,P (2x)
Biol. Unit 5: I,J,K,L (1x)
Keywords
:
Haloalcohol Dehalogenase, Halohydrin Dehalogenase, Enantioselectivity, Short-Chain Dehydrogenase/Reductase, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. M. De Jong, J. J. W. Tiesinga, A. Villa, L. Tang, D. B. Janssen, B. W. Dijkstra
Structural Basis For The Enantioselectivity Of An Epoxide Ring Opening Reaction Catalyzed By Halo Alcohol Dehalogenase Hhec.
J. Am. Chem. Soc. V. 127 13338 2005
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 16)
Info
All Hetero Components
1a: (S)-PARA-NITROSTYRENE OXIDE (SNOa)
1b: (S)-PARA-NITROSTYRENE OXIDE (SNOb)
1c: (S)-PARA-NITROSTYRENE OXIDE (SNOc)
1d: (S)-PARA-NITROSTYRENE OXIDE (SNOd)
1e: (S)-PARA-NITROSTYRENE OXIDE (SNOe)
1f: (S)-PARA-NITROSTYRENE OXIDE (SNOf)
1g: (S)-PARA-NITROSTYRENE OXIDE (SNOg)
1h: (S)-PARA-NITROSTYRENE OXIDE (SNOh)
1i: (S)-PARA-NITROSTYRENE OXIDE (SNOi)
1j: (S)-PARA-NITROSTYRENE OXIDE (SNOj)
1k: (S)-PARA-NITROSTYRENE OXIDE (SNOk)
1l: (S)-PARA-NITROSTYRENE OXIDE (SNOl)
1m: (S)-PARA-NITROSTYRENE OXIDE (SNOm)
1n: (S)-PARA-NITROSTYRENE OXIDE (SNOn)
1o: (S)-PARA-NITROSTYRENE OXIDE (SNOo)
1p: (S)-PARA-NITROSTYRENE OXIDE (SNOp)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SNO
16
Ligand/Ion
(S)-PARA-NITROSTYRENE OXIDE
[
close Hetero Component info
]
Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:84 , PHE A:86 , SER A:132 , TRP A:139 , TYR A:145 , PRO A:175 , ASN A:176 , PHE A:186 , TYR A:187 , HOH A:5003 , TRP C:249
BINDING SITE FOR RESIDUE SNO A 5002
02
AC2
SOFTWARE
PHE B:12 , PRO B:84 , PHE B:86 , SER B:132 , TRP B:139 , TYR B:145 , PRO B:175 , ASN B:176 , PHE B:186 , TYR B:187 , HOH B:5002 , TRP D:249
BINDING SITE FOR RESIDUE SNO B 5001
03
AC3
SOFTWARE
TRP A:249 , PRO C:84 , PHE C:86 , SER C:132 , TRP C:139 , TYR C:145 , PRO C:175 , ASN C:176 , PHE C:186 , TYR C:187 , HOH C:5004
BINDING SITE FOR RESIDUE SNO C 5003
04
AC4
SOFTWARE
TRP B:249 , PRO D:84 , PHE D:86 , SER D:132 , TRP D:139 , TYR D:145 , PRO D:175 , ASN D:176 , PHE D:186 , TYR D:187 , HOH D:5005
BINDING SITE FOR RESIDUE SNO D 5004
05
AC5
SOFTWARE
PRO E:84 , PHE E:86 , SER E:132 , TRP E:139 , TYR E:145 , PRO E:175 , ASN E:176 , PHE E:186 , HOH E:5007 , TRP G:249
BINDING SITE FOR RESIDUE SNO E 5006
06
AC6
SOFTWARE
PHE F:12 , PRO F:84 , PHE F:86 , SER F:132 , TRP F:139 , TYR F:145 , PRO F:175 , ASN F:176 , PHE F:186 , TYR F:187 , HOH F:5006 , TRP H:249
BINDING SITE FOR RESIDUE SNO F 5005
07
AC7
SOFTWARE
TRP E:249 , PHE G:12 , PRO G:84 , PHE G:86 , SER G:132 , TRP G:139 , TYR G:145 , PRO G:175 , ASN G:176 , PHE G:186 , TYR G:187 , HOH G:5008
BINDING SITE FOR RESIDUE SNO G 5007
08
AC8
SOFTWARE
TRP F:249 , PRO H:84 , PHE H:86 , SER H:132 , TRP H:139 , TYR H:145 , PRO H:175 , ASN H:176 , PHE H:186 , TYR H:187 , HOH H:5009
BINDING SITE FOR RESIDUE SNO H 5008
09
AC9
SOFTWARE
PHE I:12 , PRO I:84 , PHE I:86 , SER I:132 , TRP I:139 , TYR I:145 , PRO I:175 , ASN I:176 , PHE I:186 , TYR I:187 , HOH I:5011 , TRP K:249
BINDING SITE FOR RESIDUE SNO I 5010
10
BC1
SOFTWARE
PRO J:84 , PHE J:86 , SER J:132 , TRP J:139 , TYR J:145 , PRO J:175 , PHE J:186 , TYR J:187 , HOH J:5010 , TRP L:249
BINDING SITE FOR RESIDUE SNO J 5009
11
BC2
SOFTWARE
TRP I:249 , PRO K:84 , PHE K:86 , SER K:132 , TRP K:139 , TYR K:145 , PRO K:175 , ASN K:176 , PHE K:186 , HOH K:5012
BINDING SITE FOR RESIDUE SNO K 5011
12
BC3
SOFTWARE
TRP J:249 , PHE L:12 , PRO L:84 , PHE L:86 , SER L:132 , TRP L:139 , TYR L:145 , PRO L:175 , ASN L:176 , PHE L:186 , HOH L:5013
BINDING SITE FOR RESIDUE SNO L 5012
13
BC4
SOFTWARE
PHE M:12 , PRO M:84 , PHE M:86 , SER M:132 , TRP M:139 , TYR M:145 , PRO M:175 , ASN M:176 , PHE M:186 , TYR M:187 , TRP M:249 , HOH M:5015
BINDING SITE FOR RESIDUE SNO M 5014
14
BC5
SOFTWARE
PHE N:12 , PRO N:84 , PHE N:86 , SER N:132 , TRP N:139 , TYR N:145 , PRO N:175 , ASN N:176 , PHE N:186 , TYR N:187 , TRP N:249 , HOH N:5014
BINDING SITE FOR RESIDUE SNO N 5013
15
BC6
SOFTWARE
PHE O:12 , PRO O:84 , PHE O:86 , SER O:132 , TRP O:139 , TYR O:145 , PRO O:175 , ASN O:176 , PHE O:186 , TYR O:187 , TRP O:249 , HOH O:5017
BINDING SITE FOR RESIDUE SNO O 5016
16
BC7
SOFTWARE
PRO P:84 , PHE P:86 , SER P:132 , TRP P:139 , TYR P:145 , PRO P:175 , ASN P:176 , PHE P:186 , TRP P:249 , HOH P:5016
BINDING SITE FOR RESIDUE SNO P 5015
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 16)
Info
All SCOP Domains
1a: SCOP_d1zo8a_ (A:)
1b: SCOP_d1zo8c_ (C:)
1c: SCOP_d1zo8d_ (D:)
1d: SCOP_d1zo8e_ (E:)
1e: SCOP_d1zo8f_ (F:)
1f: SCOP_d1zo8g_ (G:)
1g: SCOP_d1zo8h_ (H:)
1h: SCOP_d1zo8i_ (I:)
1i: SCOP_d1zo8j_ (J:)
1j: SCOP_d1zo8k_ (K:)
1k: SCOP_d1zo8l_ (L:)
1l: SCOP_d1zo8m_ (M:)
1m: SCOP_d1zo8n_ (N:)
1n: SCOP_d1zo8o_ (O:)
1o: SCOP_d1zo8p_ (P:)
1p: SCOP_d1zo8b_ (B:)
View:
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Classes
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)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Tyrosine-dependent oxidoreductases
(503)
Protein domain
:
Halohydrin dehalogenase HheC
(5)
Agrobacterium tumefaciens [TaxId: 358]
(5)
1a
d1zo8a_
A:
1b
d1zo8c_
C:
1c
d1zo8d_
D:
1d
d1zo8e_
E:
1e
d1zo8f_
F:
1f
d1zo8g_
G:
1g
d1zo8h_
H:
1h
d1zo8i_
I:
1i
d1zo8j_
J:
1j
d1zo8k_
K:
1k
d1zo8l_
L:
1l
d1zo8m_
M:
1m
d1zo8n_
N:
1n
d1zo8o_
O:
1o
d1zo8p_
P:
1p
d1zo8b_
B:
[
close SCOP info
]
CATH Domains
(1, 16)
Info
all CATH domains
1a: CATH_1zo8A00 (A:2-253)
1b: CATH_1zo8G00 (G:2-253)
1c: CATH_1zo8H00 (H:2-253)
1d: CATH_1zo8I00 (I:2-253)
1e: CATH_1zo8J00 (J:2-253)
1f: CATH_1zo8K00 (K:2-253)
1g: CATH_1zo8L00 (L:2-253)
1h: CATH_1zo8M00 (M:2-253)
1i: CATH_1zo8N00 (N:2-253)
1j: CATH_1zo8O00 (O:2-253)
1k: CATH_1zo8P00 (P:2-253)
1l: CATH_1zo8B00 (B:2-253)
1m: CATH_1zo8C00 (C:2-253)
1n: CATH_1zo8D00 (D:2-253)
1o: CATH_1zo8E00 (E:2-253)
1p: CATH_1zo8F00 (F:2-253)
View:
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(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Agrobacterium tumefaciens. Organism_taxid: 358. Strain: ad1.
(2)
1a
1zo8A00
A:2-253
1b
1zo8G00
G:2-253
1c
1zo8H00
H:2-253
1d
1zo8I00
I:2-253
1e
1zo8J00
J:2-253
1f
1zo8K00
K:2-253
1g
1zo8L00
L:2-253
1h
1zo8M00
M:2-253
1i
1zo8N00
N:2-253
1j
1zo8O00
O:2-253
1k
1zo8P00
P:2-253
1l
1zo8B00
B:2-253
1m
1zo8C00
C:2-253
1n
1zo8D00
D:2-253
1o
1zo8E00
E:2-253
1p
1zo8F00
F:2-253
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Asym.Unit (665 KB)
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