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1ZO4
Asym. Unit
Info
Asym.Unit (184 KB)
Biol.Unit 1 (91 KB)
Biol.Unit 2 (92 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A328S MUTANT OF THE HEME DOMAIN OF P450BM-3
Authors
:
A. Hegda, B. Chen, D. C. Haines, M. Bondlela, D. Mullin, S. E. Graham, D. R. Tomchick, M. Machius, J. A. Peterson
Date
:
12 May 05 (Deposition) - 01 Aug 06 (Release) - 22 Feb 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.46
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Cytochrome P-450, Hemeprotein A328S, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. C. Haines, A. Hegde, B. Chen, W. Zhao, M. Bondlela, J. M. Humphreys, D. A. Mullin, D. R. Tomchick, M. Machius, J. A. Peterson
A Single Active-Site Mutation Of P450Bm-3 Dramatically Enhances Substrate Binding And Rate Of Product Formation.
Biochemistry V. 50 8333 2011
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Hetero Components
(3, 24)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
1k: GLYCEROL (GOLk)
1l: GLYCEROL (GOLl)
1m: GLYCEROL (GOLm)
1n: GLYCEROL (GOLn)
1o: GLYCEROL (GOLo)
1p: GLYCEROL (GOLp)
1q: GLYCEROL (GOLq)
1r: GLYCEROL (GOLr)
1s: GLYCEROL (GOLs)
1t: GLYCEROL (GOLt)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
3a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
3b: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
20
Ligand/Ion
GLYCEROL
2
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
3
MES
2
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
[
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Sites
(22, 22)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:69 , LEU A:86 , PHE A:87 , TRP A:96 , PHE A:107 , ALA A:264 , GLY A:265 , THR A:268 , THR A:269 , LEU A:272 , THR A:327 , PHE A:331 , PRO A:392 , PHE A:393 , GLY A:394 , ARG A:398 , ALA A:399 , CYS A:400 , ILE A:401 , HOH A:1494 , HOH A:1499 , HOH A:1502 , HOH A:1504 , HOH A:1517 , HOH A:1796 , HOH A:1867
BINDING SITE FOR RESIDUE HEM A 471
02
AC2
SOFTWARE
LYS B:69 , LEU B:86 , PHE B:87 , TRP B:96 , PHE B:107 , ALA B:264 , GLY B:265 , THR B:268 , THR B:269 , LEU B:272 , THR B:327 , PHE B:331 , PRO B:392 , PHE B:393 , GLY B:394 , ARG B:398 , ALA B:399 , CYS B:400 , ILE B:401 , ALA B:406 , HOH B:1493 , HOH B:1494 , HOH B:1496 , HOH B:1499 , HOH B:1500 , HOH B:1540 , HOH B:1895
BINDING SITE FOR RESIDUE HEM B 471
03
AC3
SOFTWARE
HIS B:285 , ARG B:375 , GLU B:377 , HOH B:1546 , HOH B:1871
BINDING SITE FOR RESIDUE MES B 1490
04
AC4
SOFTWARE
ILE A:366 , TRP A:367 , ARG A:375 , GLU A:377 , ARG A:378 , ALA A:384 , ILE A:385 , PRO A:386
BINDING SITE FOR RESIDUE MES A 1491
05
AC5
SOFTWARE
GLN A:128 , ARG A:132 , ASP B:121 , ARG B:161
BINDING SITE FOR RESIDUE GOL B 1470
06
AC6
SOFTWARE
ASP A:338 , GLU A:348 , HOH A:1702 , HOH A:1810
BINDING SITE FOR RESIDUE GOL A 1471
07
AC7
SOFTWARE
TYR A:166 , ARG A:167 , HOH A:1550 , LYS B:129 , LEU B:133 , ASP B:168 , HOH B:1645 , HOH B:1718
BINDING SITE FOR RESIDUE GOL A 1472
08
AC8
SOFTWARE
ARG A:79 , HOH A:1790 , HOH A:1856
BINDING SITE FOR RESIDUE GOL A 1473
09
AC9
SOFTWARE
PHE B:390 , LYS B:391 , PRO B:392 , PHE B:393 , GLY B:394 , GLN B:403 , GOL B:1475 , HOH B:1559 , HOH B:1835
BINDING SITE FOR RESIDUE GOL B 1474
10
BC1
SOFTWARE
LYS B:391 , GLY B:394 , ASN B:395 , GLY B:396 , GLN B:403 , GOL B:1474
BINDING SITE FOR RESIDUE GOL B 1475
11
BC2
SOFTWARE
GLY B:83 , ASP B:84 , GLU B:252 , TYR B:256 , HOH B:1678
BINDING SITE FOR RESIDUE GOL B 1477
12
BC3
SOFTWARE
GLU B:247 , LYS B:282 , HOH B:1676 , HOH B:1879
BINDING SITE FOR RESIDUE GOL B 1478
13
BC4
SOFTWARE
ARG A:132 , ASP B:121 , VAL B:124 , HOH B:1668
BINDING SITE FOR RESIDUE GOL B 1479
14
BC5
SOFTWARE
HIS A:285 , LYS A:289 , GLU A:377 , HOH A:1690 , HOH A:1853
BINDING SITE FOR RESIDUE GOL A 1481
15
BC6
SOFTWARE
LYS A:289 , TYR A:313 , MET A:316 , GLU A:380 , HOH A:1731
BINDING SITE FOR RESIDUE GOL A 1482
16
BC7
SOFTWARE
GLY B:240 , LYS B:241 , HOH B:1908
BINDING SITE FOR RESIDUE GOL B 1483
17
BC8
SOFTWARE
MET A:5 , LYS A:41 , ARG A:50 , HOH A:1597
BINDING SITE FOR RESIDUE GOL A 1484
18
BC9
SOFTWARE
SER A:108 , GOL A:1487 , HOH A:1521 , HOH A:1528
BINDING SITE FOR RESIDUE GOL A 1485
19
CC1
SOFTWARE
TRP A:130 , GLU A:131 , LEU A:133 , ASN A:134 , ALA A:448 , LYS A:449 , SER A:450 , HOH A:1586 , HOH A:1676
BINDING SITE FOR RESIDUE GOL A 1486
20
CC2
SOFTWARE
HIS A:100 , GLY A:396 , GLN A:397 , GOL A:1485 , HOH A:1567 , HOH A:1658 , HOH A:1735
BINDING SITE FOR RESIDUE GOL A 1487
21
CC3
SOFTWARE
VAL B:302 , PRO B:303 , SER B:304 , HOH B:1622 , HOH B:1868
BINDING SITE FOR RESIDUE GOL B 1488
22
CC4
SOFTWARE
PRO A:25 , VAL A:26 , LEU A:29 , TYR A:51
BINDING SITE FOR RESIDUE GOL A 1489
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: CYTOCHROME_P450 (A:393-402,B:393-402)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTOCHROME_P450
PS00086
Cytochrome P450 cysteine heme-iron ligand signature.
CPXB_BACMB
394-403
2
A:393-402
B:393-402
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1zo4a_ (A:)
1b: SCOP_d1zo4b_ (B:)
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Classes
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(
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Folds
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(
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Superfamilies
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(
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Cytochrome P450
(480)
Superfamily
:
Cytochrome P450
(480)
Family
:
Cytochrome P450
(323)
Protein domain
:
Cytochrome P450 bm-3
(60)
Bacillus megaterium [TaxId: 1404]
(60)
1a
d1zo4a_
A:
1b
d1zo4b_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1zo4A00 (A:1-456)
1b: CATH_1zo4B00 (B:1-457)
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)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Cytochrome p450
(271)
Homologous Superfamily
:
Cytochrome p450
(271)
Bacillus megaterium. Organism_taxid: 1404.
(20)
1a
1zo4A00
A:1-456
1b
1zo4B00
B:1-457
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
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