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Getting 'Exon' information from database.
1ZMC
Asym. Unit
Info
Asym.Unit (624 KB)
Biol.Unit 1 (160 KB)
Biol.Unit 2 (161 KB)
Biol.Unit 3 (163 KB)
Biol.Unit 4 (163 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN DIHYDROLIPOAMIDE DEHYDROGENASE COMPLEXED TO NAD+
Authors
:
C. A. Brautigam, J. L. Chuang, D. R. Tomchick, M. Machius, D. T. Chuang
Date
:
10 May 05 (Deposition) - 28 Jun 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.53
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
E3, Lipoamide Dehydrogenase, Pyruvate Dehydrogenase, Alpha- Ketoglutarate Dehydrogenase, Branched-Chain Alpha-Ketoacid Dehydrogenase, Glycine Decarboxylase, Glycine Cleavage, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. A. Brautigam, J. L. Chuang, D. R. Tomchick, M. Machius, D. T. Chuang
Crystal Structure Of Human Dihydrolipoamide Dehydrogenase: Nad(+)/Nadh Binding And The Structural Basis Of Disease-Causing Mutations
J. Mol. Biol. V. 350 543 2005
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 52)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
1b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
1c: FLAVIN-ADENINE DINUCLEOTIDE (FADc)
1d: FLAVIN-ADENINE DINUCLEOTIDE (FADd)
1e: FLAVIN-ADENINE DINUCLEOTIDE (FADe)
1f: FLAVIN-ADENINE DINUCLEOTIDE (FADf)
1g: FLAVIN-ADENINE DINUCLEOTIDE (FADg)
1h: FLAVIN-ADENINE DINUCLEOTIDE (FADh)
2a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
2b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
2c: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADc)
2d: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADd)
2e: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADe)
2f: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADf)
2g: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADg)
2h: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADh)
3a: SULFATE ION (SO4a)
3aa: SULFATE ION (SO4aa)
3ab: SULFATE ION (SO4ab)
3ac: SULFATE ION (SO4ac)
3ad: SULFATE ION (SO4ad)
3ae: SULFATE ION (SO4ae)
3af: SULFATE ION (SO4af)
3ag: SULFATE ION (SO4ag)
3ah: SULFATE ION (SO4ah)
3ai: SULFATE ION (SO4ai)
3aj: SULFATE ION (SO4aj)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
3o: SULFATE ION (SO4o)
3p: SULFATE ION (SO4p)
3q: SULFATE ION (SO4q)
3r: SULFATE ION (SO4r)
3s: SULFATE ION (SO4s)
3t: SULFATE ION (SO4t)
3u: SULFATE ION (SO4u)
3v: SULFATE ION (SO4v)
3w: SULFATE ION (SO4w)
3x: SULFATE ION (SO4x)
3y: SULFATE ION (SO4y)
3z: SULFATE ION (SO4z)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FAD
8
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
2
NAD
8
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
3
SO4
36
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(52, 52)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:64 , THR A:69 , HOH A:2026
BINDING SITE FOR RESIDUE SO4 A 2000
02
AC2
SOFTWARE
THR A:284 , ASN A:286 , LEU A:287 , GLY A:288 , LEU A:289 , GLU A:290 , GLU A:291 , HOH A:2054
BINDING SITE FOR RESIDUE SO4 A 2001
03
AC3
SOFTWARE
ARG A:299 , ARG A:301 , GLY A:324
BINDING SITE FOR RESIDUE SO4 A 2002
04
AC4
SOFTWARE
LEU A:210 , GLY A:211 , HIS A:212
BINDING SITE FOR RESIDUE SO4 A 2003
05
AC5
SOFTWARE
HIS B:64 , GLY B:68 , THR B:69
BINDING SITE FOR RESIDUE SO4 B 2004
06
AC6
SOFTWARE
LYS A:111 , ILE B:379 , GLU B:380 , GLN B:409 , HOH B:2036
BINDING SITE FOR RESIDUE SO4 B 2005
07
AC7
SOFTWARE
ARG B:299 , ARG B:301 , ALA B:323 , GLY B:324
BINDING SITE FOR RESIDUE SO4 B 2006
08
AC8
SOFTWARE
LEU B:210 , GLY B:211 , HIS B:212
BINDING SITE FOR RESIDUE SO4 B 2007
09
AC9
SOFTWARE
HIS C:64 , THR C:69 , HOH C:2132
BINDING SITE FOR RESIDUE SO4 C 2008
10
BC1
SOFTWARE
ILE C:379 , GLU C:380 , GLN C:409 , HOH C:2041 , LYS D:111
BINDING SITE FOR RESIDUE SO4 C 2009
11
BC2
SOFTWARE
ARG C:299 , ARG C:301 , GLY C:324
BINDING SITE FOR RESIDUE SO4 C 2010
12
BC3
SOFTWARE
GLY C:211 , HIS C:212
BINDING SITE FOR RESIDUE SO4 C 2011
13
BC4
SOFTWARE
HIS D:64 , GLY D:68 , THR D:69
BINDING SITE FOR RESIDUE SO4 D 2012
14
BC5
SOFTWARE
THR D:284 , ASN D:286 , LEU D:287 , GLY D:288 , LEU D:289 , GLU D:290 , GLU D:291 , HOH D:2123
BINDING SITE FOR RESIDUE SO4 D 2013
15
BC6
SOFTWARE
GLY D:378 , ILE D:379 , GLU D:380 , GLN D:409
BINDING SITE FOR RESIDUE SO4 D 2014
16
BC7
SOFTWARE
ARG D:299 , ARG D:301 , GLY D:324
BINDING SITE FOR RESIDUE SO4 D 2015
17
BC8
SOFTWARE
LEU D:210 , GLY D:211 , HIS D:212 , MET D:220
BINDING SITE FOR RESIDUE SO4 D 2016
18
BC9
SOFTWARE
HIS E:64 , GLY E:68 , THR E:69
BINDING SITE FOR RESIDUE SO4 E 2017
19
CC1
SOFTWARE
ASN E:286 , LEU E:287 , GLY E:288 , LEU E:289 , GLU E:290
BINDING SITE FOR RESIDUE SO4 E 2018
20
CC2
SOFTWARE
GLY E:378 , ILE E:379 , GLU E:380 , GLN E:409 , HOH E:2058
BINDING SITE FOR RESIDUE SO4 E 2019
21
CC3
SOFTWARE
ARG E:299 , ARG E:301 , ALA E:323 , GLY E:324
BINDING SITE FOR RESIDUE SO4 E 2020
22
CC4
SOFTWARE
LEU E:210 , GLY E:211 , HIS E:212
BINDING SITE FOR RESIDUE SO4 E 2021
23
CC5
SOFTWARE
HIS F:64 , GLY F:68 , THR F:69 , HOH F:2231
BINDING SITE FOR RESIDUE SO4 F 2022
24
CC6
SOFTWARE
THR F:284 , ASN F:286 , LEU F:287 , GLY F:288 , LEU F:289 , GLU F:290 , GLU F:291 , HOH F:2220
BINDING SITE FOR RESIDUE SO4 F 2023
25
CC7
SOFTWARE
ILE F:379 , GLU F:380 , GLN F:409
BINDING SITE FOR RESIDUE SO4 F 2024
26
CC8
SOFTWARE
ARG F:299 , ARG F:301 , LYS G:265
BINDING SITE FOR RESIDUE SO4 F 2025
27
CC9
SOFTWARE
HIS G:64 , THR G:69 , HOH G:2079 , HOH G:2257
BINDING SITE FOR RESIDUE SO4 G 2026
28
DC1
SOFTWARE
THR G:284 , ASN G:286 , LEU G:287 , GLY G:288 , LEU G:289 , GLU G:290 , GLU G:291 , HOH G:2175
BINDING SITE FOR RESIDUE SO4 G 2027
29
DC2
SOFTWARE
ILE G:379 , GLU G:380 , GLN G:409
BINDING SITE FOR RESIDUE SO4 G 2028
30
DC3
SOFTWARE
LYS F:265 , ARG G:299 , ARG G:301
BINDING SITE FOR RESIDUE SO4 G 2029
31
DC4
SOFTWARE
LEU G:210 , GLY G:211 , HIS G:212 , MET G:220 , HOH G:2217
BINDING SITE FOR RESIDUE SO4 G 2030
32
DC5
SOFTWARE
HIS H:64 , GLY H:68 , THR H:69 , HOH H:2204
BINDING SITE FOR RESIDUE SO4 H 2031
33
DC6
SOFTWARE
ASN H:286 , LEU H:287 , GLY H:288 , LEU H:289 , GLU H:290 , GLU H:291
BINDING SITE FOR RESIDUE SO4 H 2032
34
DC7
SOFTWARE
GLY H:378 , ILE H:379 , GLU H:380 , GLN H:409 , HOH H:2071
BINDING SITE FOR RESIDUE SO4 H 2033
35
DC8
SOFTWARE
ARG H:299 , ARG H:301 , ALA H:323 , GLY H:324
BINDING SITE FOR RESIDUE SO4 H 2034
36
DC9
SOFTWARE
LEU H:210 , GLY H:211 , HIS H:212 , MET H:220
BINDING SITE FOR RESIDUE SO4 H 2035
37
EC1
SOFTWARE
ILE A:12 , GLY A:13 , GLY A:15 , PRO A:16 , GLY A:17 , GLU A:36 , LYS A:37 , ASN A:38 , GLY A:43 , THR A:44 , CYS A:45 , GLY A:49 , CYS A:50 , LYS A:54 , GLY A:117 , TYR A:118 , GLY A:119 , ALA A:147 , THR A:148 , GLY A:149 , SER A:150 , SER A:168 , ILE A:189 , ARG A:280 , PHE A:283 , GLY A:319 , ASP A:320 , MET A:326 , LEU A:327 , ALA A:328 , HIS A:329 , ALA A:331 , TYR A:359 , HOH A:2004 , HOH A:2005 , HOH A:2013 , HOH A:2017 , HIS B:452
BINDING SITE FOR RESIDUE FAD A 480
38
EC2
SOFTWARE
GLY A:185 , GLY A:187 , VAL A:188 , VAL A:207 , GLU A:208 , PHE A:209 , LEU A:210 , VAL A:216 , THR A:241 , LYS A:242 , VAL A:243 , CYS A:277 , ILE A:278 , GLY A:279 , ARG A:280 , ARG A:299 , HOH A:2161
BINDING SITE FOR RESIDUE NAD A 481
39
EC3
SOFTWARE
HIS A:452 , ILE B:12 , GLY B:13 , GLY B:15 , PRO B:16 , GLY B:17 , GLU B:36 , LYS B:37 , ASN B:38 , GLY B:43 , THR B:44 , CYS B:45 , GLY B:49 , CYS B:50 , LYS B:54 , GLY B:117 , TYR B:118 , GLY B:119 , ALA B:147 , THR B:148 , GLY B:149 , SER B:150 , SER B:168 , ILE B:189 , ARG B:280 , LEU B:287 , GLY B:319 , ASP B:320 , MET B:326 , LEU B:327 , ALA B:328 , HIS B:329 , TYR B:359 , HOH B:2023 , HOH B:2041 , HOH B:2099
BINDING SITE FOR RESIDUE FAD B 480
40
EC4
SOFTWARE
PHE B:155 , GLY B:185 , GLY B:187 , VAL B:207 , GLU B:208 , PHE B:209 , LEU B:210 , GLY B:215 , VAL B:216 , THR B:241 , VAL B:243 , CYS B:277 , ILE B:278 , GLY B:279 , HOH B:2057
BINDING SITE FOR RESIDUE NAD B 481
41
EC5
SOFTWARE
ILE C:12 , GLY C:13 , GLY C:15 , PRO C:16 , GLY C:17 , ILE C:35 , GLU C:36 , LYS C:37 , ASN C:38 , GLY C:43 , THR C:44 , CYS C:45 , GLY C:49 , CYS C:50 , LYS C:54 , GLY C:117 , TYR C:118 , GLY C:119 , ALA C:147 , THR C:148 , GLY C:149 , ILE C:189 , ARG C:280 , PHE C:283 , LEU C:287 , GLY C:319 , ASP C:320 , MET C:326 , LEU C:327 , ALA C:328 , HIS C:329 , ALA C:331 , TYR C:359 , HOH C:2021 , HOH C:2027 , HOH C:2122 , HIS D:452
BINDING SITE FOR RESIDUE FAD C 480
42
EC6
SOFTWARE
PHE C:155 , GLY C:185 , GLY C:187 , VAL C:188 , VAL C:207 , GLU C:208 , PHE C:209 , LEU C:210 , GLY C:215 , VAL C:216 , THR C:241 , VAL C:243 , CYS C:277 , ILE C:278 , GLY C:279
BINDING SITE FOR RESIDUE NAD C 481
43
EC7
SOFTWARE
HIS C:452 , ILE D:12 , GLY D:13 , SER D:14 , GLY D:15 , PRO D:16 , GLY D:17 , GLU D:36 , LYS D:37 , ASN D:38 , GLY D:43 , THR D:44 , CYS D:45 , GLY D:49 , CYS D:50 , LYS D:54 , GLY D:117 , TYR D:118 , GLY D:119 , ALA D:147 , THR D:148 , GLY D:149 , SER D:150 , SER D:168 , ILE D:189 , ARG D:280 , PHE D:283 , GLY D:319 , ASP D:320 , MET D:326 , LEU D:327 , ALA D:328 , HIS D:329 , TYR D:359 , HOH D:2017 , HOH D:2020 , HOH D:2028 , HOH D:2073
BINDING SITE FOR RESIDUE FAD D 480
44
EC8
SOFTWARE
GLY D:185 , GLY D:187 , VAL D:207 , GLU D:208 , PHE D:209 , LEU D:210 , GLY D:215 , VAL D:216 , THR D:241 , LYS D:242 , VAL D:243 , CYS D:277 , ILE D:278 , GLY D:279 , ARG D:280 , ARG D:299 , MET D:326 , HOH D:2132 , HOH D:2133 , HOH D:2151
BINDING SITE FOR RESIDUE NAD D 481
45
EC9
SOFTWARE
ILE E:12 , GLY E:13 , GLY E:15 , PRO E:16 , GLY E:17 , ILE E:35 , GLU E:36 , LYS E:37 , ASN E:38 , GLY E:43 , THR E:44 , CYS E:45 , GLY E:49 , CYS E:50 , SER E:53 , LYS E:54 , TYR E:118 , GLY E:119 , ALA E:147 , THR E:148 , GLY E:149 , SER E:150 , SER E:168 , ILE E:189 , ARG E:280 , PHE E:283 , GLY E:319 , ASP E:320 , MET E:326 , LEU E:327 , ALA E:328 , HIS E:329 , TYR E:359 , HOH E:2024 , HOH E:2027 , HIS F:452
BINDING SITE FOR RESIDUE FAD E 480
46
FC1
SOFTWARE
PHE E:155 , GLY E:185 , GLY E:187 , VAL E:207 , GLU E:208 , PHE E:209 , GLY E:215 , VAL E:216 , THR E:241 , LYS E:242 , VAL E:243 , CYS E:277 , ILE E:278 , GLY E:279
BINDING SITE FOR RESIDUE NAD E 481
47
FC2
SOFTWARE
HIS E:452 , ILE F:12 , GLY F:13 , SER F:14 , GLY F:15 , PRO F:16 , GLY F:17 , GLU F:36 , LYS F:37 , ASN F:38 , GLY F:43 , THR F:44 , CYS F:45 , VAL F:48 , GLY F:49 , CYS F:50 , SER F:53 , LYS F:54 , GLY F:117 , TYR F:118 , GLY F:119 , ALA F:147 , THR F:148 , GLY F:149 , SER F:150 , ILE F:189 , ARG F:280 , PHE F:283 , GLY F:319 , ASP F:320 , MET F:326 , LEU F:327 , ALA F:328 , HIS F:329 , TYR F:359 , HOH F:2026 , HOH F:2027 , HOH F:2037 , HOH F:2177
BINDING SITE FOR RESIDUE FAD F 480
48
FC3
SOFTWARE
PHE F:155 , GLY F:185 , GLU F:208 , PHE F:209 , LEU F:210 , GLY F:215 , VAL F:216 , THR F:241 , LYS F:242 , VAL F:243 , CYS F:277 , ILE F:278 , GLY F:279 , HOH F:2224 , SER G:262
BINDING SITE FOR RESIDUE NAD F 481
49
FC4
SOFTWARE
ILE G:12 , GLY G:13 , GLY G:15 , PRO G:16 , GLY G:17 , ILE G:35 , GLU G:36 , LYS G:37 , ASN G:38 , GLY G:43 , THR G:44 , CYS G:45 , VAL G:48 , GLY G:49 , CYS G:50 , SER G:53 , LYS G:54 , TYR G:118 , GLY G:119 , ALA G:147 , THR G:148 , GLY G:149 , SER G:150 , SER G:168 , ILE G:189 , PHE G:283 , GLY G:319 , ASP G:320 , MET G:326 , LEU G:327 , ALA G:328 , HIS G:329 , ALA G:331 , TYR G:359 , HOH G:2031 , HOH G:2032 , HOH G:2061 , HOH G:2101 , HOH G:2241 , HIS H:452
BINDING SITE FOR RESIDUE FAD G 480
50
FC5
SOFTWARE
PHE G:155 , GLY G:185 , VAL G:207 , GLU G:208 , PHE G:209 , LEU G:210 , VAL G:216 , THR G:241 , LYS G:242 , VAL G:243 , CYS G:277 , ILE G:278 , GLY G:279 , HOH G:2237 , HOH G:2238
BINDING SITE FOR RESIDUE NAD G 481
51
FC6
SOFTWARE
HIS G:452 , ILE H:12 , GLY H:13 , GLY H:15 , PRO H:16 , GLY H:17 , GLU H:36 , LYS H:37 , ASN H:38 , GLY H:43 , THR H:44 , CYS H:45 , GLY H:49 , CYS H:50 , SER H:53 , LYS H:54 , TYR H:118 , GLY H:119 , ALA H:147 , THR H:148 , GLY H:149 , SER H:150 , SER H:168 , ARG H:280 , PHE H:283 , GLY H:319 , ASP H:320 , MET H:326 , LEU H:327 , ALA H:328 , HIS H:329 , TYR H:359 , HOH H:2036 , HOH H:2041 , HOH H:2091 , HOH H:2145
BINDING SITE FOR RESIDUE FAD H 480
52
FC7
SOFTWARE
PHE H:155 , GLY H:185 , GLY H:187 , VAL H:207 , GLU H:208 , PHE H:209 , GLY H:215 , VAL H:216 , THR H:241 , VAL H:243 , CYS H:277 , ILE H:278 , GLY H:279
BINDING SITE FOR RESIDUE NAD H 481
[
close Site info
]
SAPs(SNPs)/Variants
(6, 48)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_006907 (K37E, chain A/B/C/D/E/F/G/H, )
2: VAR_031922 (T69T, chain A/B/C/D/E/F/G/H, )
3: VAR_015820 (G194C, chain A/B/C/D/E/F/G/H, )
4: VAR_014555 (L296V, chain A/B/C/D/E/F/G/H, )
5: VAR_006908 (P453L, chain A/B/C/D/E/F/G/H, )
6: VAR_015821 (R460G, chain A/B/C/D/E/F/G/H, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_006907
K
72
E
DLDH_HUMAN
Disease (DLDD)
---
A/B/C/D/E/F/G/H
K
37
E
2
UniProt
VAR_031922
K
104
T
DLDH_HUMAN
Polymorphism
1130477
A/B/C/D/E/F/G/H
T
69
T
3
UniProt
VAR_015820
G
229
C
DLDH_HUMAN
Disease (DLDD)
---
A/B/C/D/E/F/G/H
G
194
C
4
UniProt
VAR_014555
L
331
V
DLDH_HUMAN
Polymorphism
17624
A/B/C/D/E/F/G/H
L
296
V
5
UniProt
VAR_006908
P
488
L
DLDH_HUMAN
Disease (DLDD)
---
A/B/C/D/E/F/G/H
P
453
L
6
UniProt
VAR_015821
R
495
G
DLDH_HUMAN
Disease (DLDD)
---
A/B/C/D/E/F/G/H
R
460
G
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: PYRIDINE_REDOX_1 (A:42-52,B:42-52,C:42-52,D:42-52,E:...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PYRIDINE_REDOX_1
PS00076
Pyridine nucleotide-disulphide oxidoreductases class-I active site.
DLDH_HUMAN
77-87
8
A:42-52
B:42-52
C:42-52
D:42-52
E:42-52
F:42-52
G:42-52
H:42-52
[
close PROSITE info
]
Exons
(13, 104)
Info
All Exons
Exon 1.3a (A:3-5 | B:4-5 | C:4-5 | D:1-5 | E:...)
Exon 1.4 (A:5-31 | B:5-31 | C:5-31 | D:5-31 ...)
Exon 1.5 (A:32-54 | B:32-54 | C:32-54 | D:32...)
Exon 1.6a (A:55-78 | B:55-78 | C:55-78 | D:55...)
Exon 1.7e (A:78-111 | B:78-111 | C:78-111 | D...)
Exon 1.8b (A:112-159 | B:112-159 | C:112-159 ...)
Exon 1.9a (A:160-193 | B:160-193 | C:160-193 ...)
Exon 1.10b (A:194-257 | B:194-257 | C:194-257 ...)
Exon 1.11 (A:257-314 | B:257-314 | C:257-314 ...)
Exon 1.12 (A:314-377 | B:314-377 | C:314-377 ...)
Exon 1.13 (A:378-423 | B:378-423 | C:378-423 ...)
Exon 1.14 (A:424-453 | B:424-453 | C:424-453 ...)
Exon 1.15e (A:454-474 | B:454-474 | C:454-474 ...)
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All Exon Boundaries
01: Boundary 1.1a/1.3a
02: Boundary 1.3a/1.4
03: Boundary 1.4/1.5
04: Boundary 1.5/1.6a
05: Boundary 1.6a/1.7e
06: Boundary 1.7e/1.8b
07: Boundary 1.8b/1.9a
08: Boundary 1.9a/1.10b
09: Boundary 1.10b/1.11
10: Boundary 1.11/1.12
11: Boundary 1.12/1.13
12: Boundary 1.13/1.14
13: Boundary 1.14/1.15e
14: Boundary 1.15e/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000205402
1a
ENSE00001876887
chr7:
107531415-107531734
320
DLDH_HUMAN
1-13
13
0
-
-
1.3a
ENST00000205402
3a
ENSE00000715773
chr7:
107533645-107533723
79
DLDH_HUMAN
14-40
27
8
A:3-5
B:4-5
C:4-5
D:1-5
E:3-5
F:4-5
G:3-5
H:4-5
3
2
2
5
3
2
3
2
1.4
ENST00000205402
4
ENSE00000715774
chr7:
107542183-107542262
80
DLDH_HUMAN
40-66
27
8
A:5-31
B:5-31
C:5-31
D:5-31
E:5-31
F:5-31
G:5-31
H:5-31
27
27
27
27
27
27
27
27
1.5
ENST00000205402
5
ENSE00000715776
chr7:
107542770-107542838
69
DLDH_HUMAN
67-89
23
8
A:32-54
B:32-54
C:32-54
D:32-54
E:32-54
F:32-54
G:32-54
H:32-54
23
23
23
23
23
23
23
23
1.6a
ENST00000205402
6a
ENSE00001665843
chr7:
107543923-107543992
70
DLDH_HUMAN
90-113
24
8
A:55-78
B:55-78
C:55-78
D:55-78
E:55-78
F:55-78
G:55-78
H:55-78
24
24
24
24
24
24
24
24
1.7e
ENST00000205402
7e
ENSE00001717474
chr7:
107545403-107545503
101
DLDH_HUMAN
113-146
34
8
A:78-111
B:78-111
C:78-111
D:78-111
E:78-111
F:78-111
G:78-111
H:78-111
34
34
34
34
34
34
34
34
1.8b
ENST00000205402
8b
ENSE00001761545
chr7:
107545806-107545949
144
DLDH_HUMAN
147-194
48
8
A:112-159
B:112-159
C:112-159
D:112-159
E:112-159
F:112-159
G:112-159
H:112-159
48
48
48
48
48
48
48
48
1.9a
ENST00000205402
9a
ENSE00001638968
chr7:
107546712-107546813
102
DLDH_HUMAN
195-228
34
8
A:160-193
B:160-193
C:160-193
D:160-193
E:160-193
F:160-193
G:160-193
H:160-193
34
34
34
34
34
34
34
34
1.10b
ENST00000205402
10b
ENSE00001672433
chr7:
107555951-107556141
191
DLDH_HUMAN
229-292
64
8
A:194-257
B:194-257
C:194-257
D:194-257
E:194-257
F:194-257
G:194-257
H:194-257
64
64
64
64
64
64
64
64
1.11
ENST00000205402
11
ENSE00001609201
chr7:
107557239-107557409
171
DLDH_HUMAN
292-349
58
8
A:257-314
B:257-314
C:257-314
D:257-314
E:257-314
F:257-314
G:257-314
H:257-314
58
58
58
58
58
58
58
58
1.12
ENST00000205402
12
ENSE00001752704
chr7:
107557718-107557907
190
DLDH_HUMAN
349-412
64
8
A:314-377
B:314-377
C:314-377
D:314-377
E:314-377
F:314-377
G:314-377
H:314-377
64
64
64
64
64
64
64
64
1.13
ENST00000205402
13
ENSE00001658920
chr7:
107558369-107558506
138
DLDH_HUMAN
413-458
46
8
A:378-423
B:378-423
C:378-423
D:378-423
E:378-423
F:378-423
G:378-423
H:378-423
46
46
46
46
46
46
46
46
1.14
ENST00000205402
14
ENSE00001606668
chr7:
107559455-107559544
90
DLDH_HUMAN
459-488
30
8
A:424-453
B:424-453
C:424-453
D:424-453
E:424-453
F:424-453
G:424-453
H:424-453
30
30
30
30
30
30
30
30
1.15e
ENST00000205402
15e
ENSE00000881778
chr7:
107559639-107560360
722
DLDH_HUMAN
489-509
21
8
A:454-474
B:454-474
C:454-474
D:454-474
E:454-474
F:454-474
G:454-474
H:454-474
21
21
21
21
21
21
21
21
[
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]
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(2, 24)
Info
all CATH domains
1a: CATH_1zmcA03 (A:351-474)
1b: CATH_1zmcB03 (B:351-474)
1c: CATH_1zmcC03 (C:351-474)
1d: CATH_1zmcD03 (D:351-474)
1e: CATH_1zmcE03 (E:351-474)
1f: CATH_1zmcF03 (F:351-474)
1g: CATH_1zmcG03 (G:351-474)
1h: CATH_1zmcH03 (H:351-474)
2a: CATH_1zmcB01 (B:4-152,B:279-350)
2b: CATH_1zmcA02 (A:153-278)
2c: CATH_1zmcB02 (B:153-278)
2d: CATH_1zmcC02 (C:153-278)
2e: CATH_1zmcD02 (D:153-278)
2f: CATH_1zmcE02 (E:153-278)
2g: CATH_1zmcF02 (F:153-278)
2h: CATH_1zmcG02 (G:153-278)
2i: CATH_1zmcH02 (H:153-278)
2j: CATH_1zmcC01 (C:4-152,C:279-350)
2k: CATH_1zmcF01 (F:4-152,F:279-350)
2l: CATH_1zmcH01 (H:4-152,H:279-350)
2m: CATH_1zmcA01 (A:3-152,A:279-350)
2n: CATH_1zmcE01 (E:3-152,E:279-350)
2o: CATH_1zmcG01 (G:3-152,G:279-350)
2p: CATH_1zmcD01 (D:1-152,D:279-350)
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(
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Enolase-like; domain 1
(252)
Homologous Superfamily
:
[code=3.30.390.30, no name defined]
(99)
Human (Homo sapiens)
(26)
1a
1zmcA03
A:351-474
1b
1zmcB03
B:351-474
1c
1zmcC03
C:351-474
1d
1zmcD03
D:351-474
1e
1zmcE03
E:351-474
1f
1zmcF03
F:351-474
1g
1zmcG03
G:351-474
1h
1zmcH03
H:351-474
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
FAD/NAD(P)-binding domain
(373)
Homologous Superfamily
:
[code=3.50.50.60, no name defined]
(373)
Human (Homo sapiens)
(57)
2a
1zmcB01
B:4-152,B:279-350
2b
1zmcA02
A:153-278
2c
1zmcB02
B:153-278
2d
1zmcC02
C:153-278
2e
1zmcD02
D:153-278
2f
1zmcE02
E:153-278
2g
1zmcF02
F:153-278
2h
1zmcG02
G:153-278
2i
1zmcH02
H:153-278
2j
1zmcC01
C:4-152,C:279-350
2k
1zmcF01
F:4-152,F:279-350
2l
1zmcH01
H:4-152,H:279-350
2m
1zmcA01
A:3-152,A:279-350
2n
1zmcE01
E:3-152,E:279-350
2o
1zmcG01
G:3-152,G:279-350
2p
1zmcD01
D:1-152,D:279-350
[
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Pfam Domains
(3, 24)
Info
all PFAM domains
1a: PFAM_Pyr_redox_1zmcH01 (H:180-264)
1b: PFAM_Pyr_redox_1zmcH02 (H:180-264)
1c: PFAM_Pyr_redox_1zmcH03 (H:180-264)
1d: PFAM_Pyr_redox_1zmcH04 (H:180-264)
1e: PFAM_Pyr_redox_1zmcH05 (H:180-264)
1f: PFAM_Pyr_redox_1zmcH06 (H:180-264)
1g: PFAM_Pyr_redox_1zmcH07 (H:180-264)
1h: PFAM_Pyr_redox_1zmcH08 (H:180-264)
2a: PFAM_Pyr_redox_2_1zmcH09 (H:8-326)
2b: PFAM_Pyr_redox_2_1zmcH10 (H:8-326)
2c: PFAM_Pyr_redox_2_1zmcH11 (H:8-326)
2d: PFAM_Pyr_redox_2_1zmcH12 (H:8-326)
2e: PFAM_Pyr_redox_2_1zmcH13 (H:8-326)
2f: PFAM_Pyr_redox_2_1zmcH14 (H:8-326)
2g: PFAM_Pyr_redox_2_1zmcH15 (H:8-326)
2h: PFAM_Pyr_redox_2_1zmcH16 (H:8-326)
3a: PFAM_Pyr_redox_dim_1zmcH17 (H:354-463)
3b: PFAM_Pyr_redox_dim_1zmcH18 (H:354-463)
3c: PFAM_Pyr_redox_dim_1zmcH19 (H:354-463)
3d: PFAM_Pyr_redox_dim_1zmcH20 (H:354-463)
3e: PFAM_Pyr_redox_dim_1zmcH21 (H:354-463)
3f: PFAM_Pyr_redox_dim_1zmcH22 (H:354-463)
3g: PFAM_Pyr_redox_dim_1zmcH23 (H:354-463)
3h: PFAM_Pyr_redox_dim_1zmcH24 (H:354-463)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
NADP_Rossmann
(1239)
Family
:
Pyr_redox
(62)
Homo sapiens (Human)
(8)
1a
Pyr_redox-1zmcH01
H:180-264
1b
Pyr_redox-1zmcH02
H:180-264
1c
Pyr_redox-1zmcH03
H:180-264
1d
Pyr_redox-1zmcH04
H:180-264
1e
Pyr_redox-1zmcH05
H:180-264
1f
Pyr_redox-1zmcH06
H:180-264
1g
Pyr_redox-1zmcH07
H:180-264
1h
Pyr_redox-1zmcH08
H:180-264
Family
:
Pyr_redox_2
(69)
Homo sapiens (Human)
(8)
2a
Pyr_redox_2-1zmcH09
H:8-326
2b
Pyr_redox_2-1zmcH10
H:8-326
2c
Pyr_redox_2-1zmcH11
H:8-326
2d
Pyr_redox_2-1zmcH12
H:8-326
2e
Pyr_redox_2-1zmcH13
H:8-326
2f
Pyr_redox_2-1zmcH14
H:8-326
2g
Pyr_redox_2-1zmcH15
H:8-326
2h
Pyr_redox_2-1zmcH16
H:8-326
Clan
:
no clan defined [family: Pyr_redox_dim]
(44)
Family
:
Pyr_redox_dim
(44)
Homo sapiens (Human)
(7)
3a
Pyr_redox_dim-1zmcH17
H:354-463
3b
Pyr_redox_dim-1zmcH18
H:354-463
3c
Pyr_redox_dim-1zmcH19
H:354-463
3d
Pyr_redox_dim-1zmcH20
H:354-463
3e
Pyr_redox_dim-1zmcH21
H:354-463
3f
Pyr_redox_dim-1zmcH22
H:354-463
3g
Pyr_redox_dim-1zmcH23
H:354-463
3h
Pyr_redox_dim-1zmcH24
H:354-463
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