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1ZLU
Asym. Unit
Info
Asym.Unit (139 KB)
Biol.Unit 1 (131 KB)
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(1)
Title
:
FAB 2G12 + MAN5
Authors
:
D. A. Calarese, H. -K. Lee, M. D. Best, R. D. Astronomo, R. L. Stanfield, D. R. Burton, C. H. Wong, I. A. Wilson
Date
:
09 May 05 (Deposition) - 09 Aug 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.75
Chains
:
Asym. Unit : H,K,L,M
Biol. Unit 1: H,K,L,M (1x)
Keywords
:
Hiv Neutralizing Antibody; Anti-Carbohydrate; Domain- Swapping, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. A. Calarese, H. -K. Lee, C. Y. Huang, M. D. Best, R. D. Astronomo, R. L. Stanfield, H. Katinger, D. R. Burton, C. H. Wong, I. A. Wilson
Dissection Of The Carbohydrate Specificity Of The Broadly Neutralizing Anti-Hiv-1 Antibody 2G12
Proc. Natl. Acad. Sci. Usa V. 102 13372 2005
(for further references see the
PDB file header
)
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Hetero Components
(1, 7)
Info
All Hetero Components
1a: ALPHA-D-MANNOSE (MANa)
1b: ALPHA-D-MANNOSE (MANb)
1c: ALPHA-D-MANNOSE (MANc)
1d: ALPHA-D-MANNOSE (MANd)
1e: ALPHA-D-MANNOSE (MANe)
1f: ALPHA-D-MANNOSE (MANf)
1g: ALPHA-D-MANNOSE (MANg)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MAN
7
Ligand/Ion
ALPHA-D-MANNOSE
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA H:31 , HIS H:32 , THR H:33 , LYS H:95 , GLY H:96 , LEU H:100 , SER H:100A , ASP H:100B , ASN H:100C , ASP H:100D , MAN H:230 , GLY L:93 , TYR L:94
BINDING SITE FOR RESIDUE MAN H 229
2
AC2
SOFTWARE
ALA H:31 , LEU H:100 , ASP H:100B , MAN H:229
BINDING SITE FOR RESIDUE MAN H 230
3
AC3
SOFTWARE
GLY K:93 , ALA M:31 , HIS M:32 , THR M:33 , LYS M:95 , GLY M:96 , LEU M:100 , SER M:100A , ASP M:100B , ASN M:100C , ASP M:100D , MAN M:230
BINDING SITE FOR RESIDUE MAN M 229
4
AC4
SOFTWARE
ALA M:31 , LEU M:100 , SER M:100A , ASP M:100B , MAN M:229 , MAN M:231
BINDING SITE FOR RESIDUE MAN M 230
5
AC5
SOFTWARE
THR M:52A , MAN M:230 , MAN M:232 , MAN M:233
BINDING SITE FOR RESIDUE MAN M 231
6
AC6
SOFTWARE
THR M:55 , MAN M:231 , MAN M:233
BINDING SITE FOR RESIDUE MAN M 232
7
AC7
SOFTWARE
LYS L:145 , GLN L:147 , MAN M:231 , MAN M:232
BINDING SITE FOR RESIDUE MAN M 233
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 8)
Info
All SCOP Domains
1a: SCOP_d1zluk1 (K:2-107)
1b: SCOP_d1zlul1 (L:2-107)
2a: SCOP_d1zluk2 (K:108-212)
2b: SCOP_d1zlul2 (L:108-212)
3a: SCOP_d1zluh2 (H:114-227)
3b: SCOP_d1zlum2 (M:114-227)
4a: SCOP_d1zluh1 (H:1-112)
4b: SCOP_d1zlum1 (M:1-112)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
automated matches
(864)
Protein domain
:
automated matches
(864)
Human (Homo sapiens) [TaxId: 9606]
(448)
1a
d1zluk1
K:2-107
1b
d1zlul1
L:2-107
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
automated matches
(652)
Human (Homo sapiens) [TaxId: 9606]
(334)
2a
d1zluk2
K:108-212
2b
d1zlul2
L:108-212
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
(608)
Human (Homo sapiens) [TaxId: 9606]
(179)
3a
d1zluh2
H:114-227
3b
d1zlum2
M:114-227
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Human (Homo sapiens), cluster 3 [TaxId: 9606]
(33)
4a
d1zluh1
H:1-112
4b
d1zlum1
M:1-112
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1zluL02 (L:108-211)
1b: CATH_1zluH02 (H:114-227)
1c: CATH_1zluM02 (M:114-227)
1d: CATH_1zluH01 (H:1-113)
1e: CATH_1zluM01 (M:1-113)
1f: CATH_1zluK02 (K:108-211)
1g: CATH_1zluK01 (K:2-107)
1h: CATH_1zluL01 (L:2-107)
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Organisms
(
)
(
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
1a
1zluL02
L:108-211
1b
1zluH02
H:114-227
1c
1zluM02
M:114-227
1d
1zluH01
H:1-113
1e
1zluM01
M:1-113
1f
1zluK02
K:108-211
1g
1zluK01
K:2-107
1h
1zluL01
L:2-107
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Pfam Domains
(0, 0)
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all PFAM domains
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Asymmetric Unit 1
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Asym.Unit (139 KB)
Header - Asym.Unit
Biol.Unit 1 (131 KB)
Header - Biol.Unit 1
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