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1ZL3
Asym. Unit
Info
Asym.Unit (64 KB)
Biol.Unit 1 (59 KB)
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(1)
Title
:
COUPLING OF ACTIVE SITE MOTIONS AND RNA BINDING
Authors
:
C. Hoang, C. S. Hamilton, E. G. Mueller, A. R. Ferre-D'Amare
Date
:
05 May 05 (Deposition) - 09 Aug 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Rna-Modification, Inter-Domain Coupling, Product Release, Lyase/Rna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Hoang, C. S. Hamilton, E. G. Mueller, A. R. Ferre-D'Amare
Precursor Complex Structure Of Pseudouridine Synthase Trub Suggests Coupling Of Active Site Perturbations To An Rna-Sequestering Peripheral Protein Domain
Protein Sci. V. 14 2201 2005
(for further references see the
PDB file header
)
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
2a: 5-FLUOROURIDINE (UD5a)
View:
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Label:
No.
Name
Count
Type
Full Name
1
SO4
3
Ligand/Ion
SULFATE ION
2
UD5
1
Mod. Nucleotide
5-FLUOROURIDINE
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:31 , ARG A:34 , ARG A:220 , SO4 A:902
BINDING SITE FOR RESIDUE SO4 A 901
2
AC2
SOFTWARE
MET A:23 , LYS A:31 , LEU A:216 , ARG A:220 , SO4 A:901
BINDING SITE FOR RESIDUE SO4 A 902
3
AC3
SOFTWARE
THR A:272 , SER A:273
BINDING SITE FOR RESIDUE SO4 A 903
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1zl3a1 (A:251-310)
2a: SCOP_d1zl3a2 (A:9-250)
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)
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)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
PUA domain-like
(96)
Superfamily
:
PUA domain-like
(96)
Family
:
PUA domain
(22)
Protein domain
:
Pseudouridine synthase II TruB, C-terminal domain
(11)
Escherichia coli [TaxId: 562]
(3)
1a
d1zl3a1
A:251-310
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Pseudouridine synthase
(30)
Superfamily
:
Pseudouridine synthase
(30)
Family
:
Pseudouridine synthase II TruB
(12)
Protein domain
:
Pseudouridine synthase II TruB
(11)
Escherichia coli [TaxId: 562]
(3)
2a
d1zl3a2
A:9-250
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1zl3A02 (A:250-310)
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)
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)
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4
(16)
Homologous Superfamily
:
[code=2.30.130.10, no name defined]
(14)
[unclassified]
(3)
1a
1zl3A02
A:250-310
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_TruB_C_2_1zl3A01 (A:252-309)
2a: PFAM_TruB_N_1zl3A02 (A:33-180)
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Clan
:
PUA
(42)
Family
:
TruB-C_2
(2)
Escherichia coli (strain K12)
(2)
1a
TruB-C_2-1zl3A01
A:252-309
Clan
:
no clan defined [family: TruB_N]
(12)
Family
:
TruB_N
(12)
Escherichia coli (strain K12)
(2)
2a
TruB_N-1zl3A02
A:33-180
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Asym.Unit (64 KB)
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