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1ZKJ
Biol. Unit 1
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Asym.Unit (67 KB)
Biol.Unit 1 (63 KB)
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(1)
Title
:
STRUCTURAL BASIS FOR THE EXTENDED SUBSTRATE SPECTRUM OF CMY-10, A PLASMID-ENCODED CLASS C BETA-LACTAMASE
Authors
:
S. S. Cha, H. I. Jung, Y. J. An, S. H. Lee
Date
:
03 May 05 (Deposition) - 18 Apr 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.55
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Extended Spectrum Beta-Lactamase, Cmy-10, Plasmid, Class C, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Y. Kim, H. I. Jung, Y. J. An, J. H. Lee, S. J. Kim, S. H. Jeong, K. J. Lee, P. G. Suh, H. S. Lee, S. H. Lee, S. S. Cha
Structural Basis For The Extended Substrate Spectrum Of Cmy-10, A Plasmid-Encoded Class C Beta-Lactamase.
Mol. Microbiol. V. 60 907 2006
(for further references see the
PDB file header
)
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
1b: ACETIC ACID (ACYb)
1c: ACETIC ACID (ACYc)
1d: ACETIC ACID (ACYd)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
2e: ZINC ION (ZNe)
2f: ZINC ION (ZNf)
2g: ZINC ION (ZNg)
2h: ZINC ION (ZNh)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ACY
4
Ligand/Ion
ACETIC ACID
2
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:7 , HIS A:40
BINDING SITE FOR RESIDUE ZN A 506
02
AC2
SOFTWARE
HIS A:148 , HOH A:1566 , HOH A:1571 , HOH A:1699
BINDING SITE FOR RESIDUE ZN A 507
03
AC3
SOFTWARE
HIS A:161 , ACY A:1403 , ACY A:1404
BINDING SITE FOR RESIDUE ZN A 508
04
AC4
SOFTWARE
HIS A:187 , HOH A:1493 , HOH A:1641
BINDING SITE FOR RESIDUE ZN A 509
05
AC5
SOFTWARE
ASN A:191 , HOH A:1444 , HOH A:1446 , HOH A:1474 , HOH A:1476 , HOH A:1595
BINDING SITE FOR RESIDUE ZN A 510
06
AC6
SOFTWARE
GLY A:359
BINDING SITE FOR RESIDUE ZN A 511
07
AC7
SOFTWARE
HIS A:24 , TYR A:341 , ACY A:1401
BINDING SITE FOR RESIDUE ZN A 512
08
AC8
SOFTWARE
ASP A:14 , HOH A:1640 , HOH A:1683 , HOH A:1684
BINDING SITE FOR RESIDUE ZN A 514
09
AC9
SOFTWARE
GLU A:23 , HIS A:24 , ZN A:512 , HOH A:1551
BINDING SITE FOR RESIDUE ACY A 1401
10
BC1
SOFTWARE
VAL A:213 , ASN A:214 , THR A:316 , ASN A:317 , HOH A:1470
BINDING SITE FOR RESIDUE ACY A 1402
11
BC2
SOFTWARE
HIS A:93 , TRP A:96 , HIS A:161 , SER A:165 , ZN A:508 , ACY A:1404 , HOH A:1455
BINDING SITE FOR RESIDUE ACY A 1403
12
BC3
SOFTWARE
SER A:129 , MET A:132 , ARG A:133 , HIS A:161 , ZN A:508 , ACY A:1403
BINDING SITE FOR RESIDUE ACY A 1404
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1zkja_ (A:)
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Classes
(
)
(
)
Folds
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(
)
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)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
beta-lactamase/transpeptidase-like
(515)
Superfamily
:
beta-lactamase/transpeptidase-like
(515)
Family
:
automated matches
(70)
Protein domain
:
automated matches
(70)
Enterobacter aerogenes [TaxId: 548]
(1)
1a
d1zkja_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1zkjA00 (A:7-359)
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Classes
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)
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)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Beta-lactamase
(339)
Homologous Superfamily
:
DD-peptidase/beta-lactamase superfamily
(335)
Enterobacter aerogenes. Organism_taxid: 548.
(1)
1a
1zkjA00
A:7-359
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Beta_lactamase_1zkjA01 (A:13-358)
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Clans
(
)
(
)
Families
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(
)
Organisms
(
)
(
)
Clan
:
Beta-lactamase
(210)
Family
:
Beta-lactamase
(79)
Enterobacter aerogenes (Aerobacter aerogenes)
(1)
1a
Beta-lactamase-1zkjA01
A:13-358
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Asymmetric Unit 1
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Asym.Unit (67 KB)
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