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1ZKC
Asym. Unit
Info
Asym.Unit (146 KB)
Biol.Unit 1 (72 KB)
Biol.Unit 2 (72 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE CYCLOPHILN_RING DOMAIN OF HUMAN PEPTIDYLPROLYL ISOMERASE (CYCLOPHILIN)-LIKE 2 ISOFORM B
Authors
:
J. R. Walker, T. Davis, E. M. Newman, F. Mackenzie, J. Weigelt, M. Sundstrom, C. Arrowsmith, A. Edwards, A. Bochkarev, S. Dhe- Paganon, Structural Genomics Consortium (Sgc)
Date
:
02 May 05 (Deposition) - 16 Aug 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Cis-Trans Isomerization, Peptidylprolyl Isomerase, Protein- Folding, Structural Genomics Consortium, Sgc
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. R. Walker, T. Davis, E. M. Newman, F. Mackenzie, J. Weigelt, M. Sundstrom, C. Arrowsmith, A. Edwards, A. Bochkarev, S. Dhe-Paganon, Structural Genomics Consortium (Sgc)
Crystal Structure Of The Human Peptidylprolyl Isomerase-Like 2 Isoform B
To Be Published
(for further references see the
PDB file header
)
[
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]
Hetero Components
(1, 2)
Info
All Hetero Components
1a: BETA-MERCAPTOETHANOL (BMEa)
1b: BETA-MERCAPTOETHANOL (BMEb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BME
2
Ligand/Ion
BETA-MERCAPTOETHANOL
[
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]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:327 , ARG A:385 , SER A:386 , CYS A:387 , VAL A:455
BINDING SITE FOR RESIDUE BME A 638
2
AC2
SOFTWARE
ASN B:327 , PHE B:328 , ARG B:385 , SER B:386 , CYS B:387 , VAL B:455
BINDING SITE FOR RESIDUE BME B 639
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: CSA_PPIASE_2 (A:285-433,B:285-433)
2: CSA_PPIASE_1 (A:316-333,B:316-333)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CSA_PPIASE_2
PS50072
Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.
PPIL2_HUMAN
285-433
2
A:285-433
B:285-433
2
CSA_PPIASE_1
PS00170
Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.
PPIL2_HUMAN
316-333
2
A:316-333
B:316-333
[
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Exons
(9, 18)
Info
All Exons
Exon 1.20 (A:271-279 | B:273-279)
Exon 1.21 (A:280-299 | B:280-299)
Exon 1.22 (A:300-329 | B:300-329)
Exon 1.23 (A:330-341 | B:330-341)
Exon 1.24 (A:341-380 | B:341-380)
Exon 1.25 (A:380-399 | B:380-399)
Exon 1.26a (A:399-423 | B:399-423)
Exon 1.26c (A:424-444 | B:424-444)
Exon 1.27b (A:445-457 | B:445-457)
View:
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All Exon Boundaries
01: Boundary 1.18b/1.20
02: Boundary 1.20/1.21
03: Boundary 1.21/1.22
04: Boundary 1.22/1.23
05: Boundary 1.23/1.24
06: Boundary 1.24/1.25
07: Boundary 1.25/1.26a
08: Boundary 1.26a/1.26c
09: Boundary 1.26c/1.27b
10: Boundary 1.27b/1.27e
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.7d
ENST00000398831
7d
ENSE00001783855
chr22:
22020311-22020420
110
PPIL2_HUMAN
1-11
11
0
-
-
1.9a
ENST00000398831
9a
ENSE00000879341
chr22:
22024202-22024251
50
PPIL2_HUMAN
11-28
18
0
-
-
1.10a
ENST00000398831
10a
ENSE00001745860
chr22:
22024855-22024900
46
PPIL2_HUMAN
28-43
16
0
-
-
1.10c
ENST00000398831
10c
ENSE00001621823
chr22:
22025286-22025348
63
PPIL2_HUMAN
43-64
22
0
-
-
1.11
ENST00000398831
11
ENSE00001606560
chr22:
22026619-22026670
52
PPIL2_HUMAN
64-81
18
0
-
-
1.13
ENST00000398831
13
ENSE00001636121
chr22:
22029353-22029404
52
PPIL2_HUMAN
82-99
18
0
-
-
1.15a
ENST00000398831
15a
ENSE00002194623
chr22:
22035588-22035679
92
PPIL2_HUMAN
99-129
31
0
-
-
1.16
ENST00000398831
16
ENSE00001687385
chr22:
22036726-22036815
90
PPIL2_HUMAN
130-159
30
0
-
-
1.17
ENST00000398831
17
ENSE00001654978
chr22:
22037471-22037546
76
PPIL2_HUMAN
160-185
26
0
-
-
1.18b
ENST00000398831
18b
ENSE00001714065
chr22:
22039042-22039202
161
PPIL2_HUMAN
185-238
54
0
-
-
1.20
ENST00000398831
20
ENSE00001711283
chr22:
22040772-22040847
76
PPIL2_HUMAN
239-264
26
2
A:271-279
B:273-279
9
7
1.21
ENST00000398831
21
ENSE00001668058
chr22:
22041181-22041287
107
PPIL2_HUMAN
264-299
36
2
A:280-299
B:280-299
20
20
1.22
ENST00000398831
22
ENSE00001749741
chr22:
22041932-22042021
90
PPIL2_HUMAN
300-329
30
2
A:300-329
B:300-329
30
30
1.23
ENST00000398831
23
ENSE00001786549
chr22:
22042362-22042395
34
PPIL2_HUMAN
330-341
12
2
A:330-341
B:330-341
12
12
1.24
ENST00000398831
24
ENSE00001668073
chr22:
22043021-22043138
118
PPIL2_HUMAN
341-380
40
2
A:341-380
B:341-380
40
40
1.25
ENST00000398831
25
ENSE00001804654
chr22:
22048105-22048161
57
PPIL2_HUMAN
380-399
20
2
A:380-399
B:380-399
20
20
1.26a
ENST00000398831
26a
ENSE00001731119
chr22:
22048882-22048954
73
PPIL2_HUMAN
399-423
25
2
A:399-423
B:399-423
25
25
1.26c
ENST00000398831
26c
ENSE00001608454
chr22:
22049044-22049106
63
PPIL2_HUMAN
424-444
21
2
A:424-444
B:424-444
21
21
1.27b
ENST00000398831
27b
ENSE00001623901
chr22:
22049226-22049359
134
PPIL2_HUMAN
445-489
45
2
A:445-457
B:445-457
13
13
1.27e
ENST00000398831
27e
ENSE00001651605
chr22:
22049683-22050712
1030
PPIL2_HUMAN
489-520
32
0
-
-
[
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]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1zkca1 (A:280-457)
1b: SCOP_d1zkcb_ (B:)
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)
Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Cyclophilin-like
(169)
Superfamily
:
Cyclophilin-like
(169)
Family
:
Cyclophilin (peptidylprolyl isomerase)
(160)
Protein domain
:
Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1zkca1
A:280-457
1b
d1zkcb_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1zkcB01 (B:279-438)
1b: CATH_1zkcA00 (A:271-457)
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(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Cyclophilin
(95)
Homologous Superfamily
:
Cyclophilin
(95)
Human (Homo sapiens)
(58)
1a
1zkcB01
B:279-438
1b
1zkcA00
A:271-457
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Pro_isomerase_1zkcB01 (B:281-433)
1b: PFAM_Pro_isomerase_1zkcB02 (B:281-433)
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(
)
Clan
:
Cyclophil-like
(65)
Family
:
Pro_isomerase
(53)
Homo sapiens (Human)
(42)
1a
Pro_isomerase-1zkcB01
B:281-433
1b
Pro_isomerase-1zkcB02
B:281-433
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Asym.Unit (146 KB)
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