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1ZIZ
Biol. Unit 1
Info
Asym.Unit (55 KB)
Biol.Unit 1 (50 KB)
Biol.Unit 2 (98 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN GALACTOSYLTRANSFERASE (GTB) COMPLEXED WITH GALACTOSE
Authors
:
J. A. Letts, N. L. Rose, Y. R. Fang, C. H. Barry, S. N. Borisova, N. O. Seto, M. M. Palcic, S. V. Evans
Date
:
27 Apr 05 (Deposition) - 13 Dec 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.49
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (2x)
Keywords
:
Gtb, Abo(H), H-Antigen, Blood Group, Transferase, Retaining
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. A. Letts, N. L. Rose, Y. R. Fang, C. H. Barry, S. N. Borisova, N. O. Seto M. M. Palcic, S. V. Evans
Differential Recognition Of The Type I And Ii H Antigen Acceptors By The Human Abo(H) Blood Group A And B Glycosyltransferases.
J. Biol. Chem. V. 281 3625 2006
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: BETA-D-GALACTOSE (GALa)
3a: MERCURY (II) ION (HGa)
3b: MERCURY (II) ION (HGb)
3c: MERCURY (II) ION (HGc)
3d: MERCURY (II) ION (HGd)
3e: MERCURY (II) ION (HGe)
3f: MERCURY (II) ION (HGf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
GAL
1
Ligand/Ion
BETA-D-GALACTOSE
3
HG
-1
Ligand/Ion
MERCURY (II) ION
[
close Hetero Component info
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:233 , PHE A:236 , THR A:245 , TRP A:300 , GLU A:303 , HOH A:587 , HOH A:599 , HOH A:711 , HOH A:722
BINDING SITE FOR RESIDUE GAL A 1
2
AC2
SOFTWARE
LEU A:280 , CYS A:284 , LEU A:306
BINDING SITE FOR RESIDUE HG A 401
3
AC3
SOFTWARE
THR A:119 , CYS A:209 , HG A:405 , CL A:407
BINDING SITE FOR RESIDUE HG A 402
4
AC4
SOFTWARE
CYS A:284 , HIS A:305 , TYR A:309
BINDING SITE FOR RESIDUE HG A 403
5
AC5
SOFTWARE
CYS A:80 , GLY A:98
BINDING SITE FOR RESIDUE HG A 404
6
AC6
SOFTWARE
THR A:119 , PHE A:121 , CYS A:209 , HG A:402 , CL A:407 , HOH A:651
BINDING SITE FOR RESIDUE HG A 405
7
AC7
SOFTWARE
MET A:288 , ASP A:302
BINDING SITE FOR RESIDUE HG A 406
8
AC8
SOFTWARE
CYS A:209 , PHE A:270 , HG A:402 , HG A:405
BINDING SITE FOR RESIDUE CL A 407
[
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]
SAPs(SNPs)/Variants
(20, 20)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_019149 (M63H, chain A, )
02: VAR_019150 (P74S, chain A, )
03: VAR_003409 (P156L, chain A, )
04: VAR_019151 (R161H, chain A, )
05: VAR_036738 (T163M, chain A, )
06: VAR_036739 (R198W, chain A, )
07: VAR_019152 (R199C, chain A, )
08: VAR_036740 (M214R, chain A, )
09: VAR_019153 (F216I, chain A, )
10: VAR_036741 (E223D, chain A, )
11: VAR_055227 (G230R, chain A, )
12: VAR_072628 (P234A, chain A, )
13: VAR_003411 (S235S, chain A, )
14: VAR_033540 (P257L, chain A, )
15: VAR_003412 (M266M, chain A, )
16: VAR_003413 (A268A, chain A, )
17: VAR_033541 (A268R, chain A, )
18: VAR_019154 (V277M, chain A, )
19: VAR_036742 (M288R, chain A, )
20: VAR_036743 (D291N, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_019149
R
63
H
BGAT_HUMAN
Polymorphism
549446
A
M
63
H
02
UniProt
VAR_019150
P
74
S
BGAT_HUMAN
Polymorphism
512770
A
P
74
S
03
UniProt
VAR_003409
P
156
L
BGAT_HUMAN
Polymorphism
1053878
A
P
156
L
04
UniProt
VAR_019151
R
161
H
BGAT_HUMAN
Polymorphism
8176738
A
R
161
H
05
UniProt
VAR_036738
T
163
M
BGAT_HUMAN
Polymorphism
55756402
A
T
163
M
06
UniProt
VAR_036739
R
198
W
BGAT_HUMAN
Polymorphism
56223957
A
R
198
W
07
UniProt
VAR_019152
R
199
C
BGAT_HUMAN
Polymorphism
8176739
A
R
199
C
08
UniProt
VAR_036740
M
214
R
BGAT_HUMAN
Polymorphism
55827808
A
M
214
R
09
UniProt
VAR_019153
F
216
I
BGAT_HUMAN
Polymorphism
8176740
A
F
216
I
10
UniProt
VAR_036741
E
223
D
BGAT_HUMAN
Polymorphism
---
A
E
223
D
11
UniProt
VAR_055227
G
230
R
BGAT_HUMAN
Unclassified
---
A
G
230
R
12
UniProt
VAR_072628
P
234
A
BGAT_HUMAN
Polymorphism
---
A
P
234
A
13
UniProt
VAR_003411
G
235
S
BGAT_HUMAN
Polymorphism
8176743
A
S
235
S
14
UniProt
VAR_033540
P
257
L
BGAT_HUMAN
Polymorphism
8176745
A
P
257
L
15
UniProt
VAR_003412
L
266
M
BGAT_HUMAN
Polymorphism
8176746
A
M
266
M
16
UniProt
VAR_003413
G
268
A
BGAT_HUMAN
Polymorphism
8176747
A
A
268
A
17
UniProt
VAR_033541
G
268
R
BGAT_HUMAN
Polymorphism
8176747
A
A
268
R
18
UniProt
VAR_019154
V
277
M
BGAT_HUMAN
Polymorphism
8176748
A
V
277
M
19
UniProt
VAR_036742
M
288
R
BGAT_HUMAN
Polymorphism
---
A
M
288
R
20
UniProt
VAR_036743
D
291
N
BGAT_HUMAN
Polymorphism
---
A
D
291
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1ziza_ (A:)
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)
Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Nucleotide-diphospho-sugar transferases
(408)
Superfamily
:
Nucleotide-diphospho-sugar transferases
(408)
Family
:
alpha-1,3-galactosyltransferase-like
(125)
Protein domain
:
automated matches
(38)
Human (Homo sapiens) [TaxId: 9606]
(36)
1a
d1ziza_
A:
[
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1zizA00 (A:62-345)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
(231)
Homologous Superfamily
:
Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
(231)
Human (Homo sapiens)
(73)
1a
1zizA00
A:62-345
[
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Glyco_transf_6_1zizA01 (A:64-345)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
GT-A
(172)
Family
:
Glyco_transf_6
(55)
Homo sapiens (Human)
(40)
1a
Glyco_transf_6-1zizA01
A:64-345
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Chain A
Asymmetric Unit 1
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