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1ZIV
Asym. Unit
Info
Asym.Unit (58 KB)
Biol.Unit 1 (53 KB)
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(1)
Title
:
CATALYTIC DOMAIN OF HUMAN CALPAIN-9
Authors
:
J. R. Walker, T. Davis, E. M. Newman, F. Mackenzie, A. Dong, J. Choe, C. Arrowsmith, M. Sundstrom, A. Edwards, A. Bochkarev, S. Dhe- Paganon, Structural Genomics Consortium (Sgc)
Date
:
27 Apr 05 (Deposition) - 05 Jul 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.31
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Cysteine Protease, Papain, Calcium-Dependent, Thiol Protease, Structural Genomics Consortium, Sgc, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. L. Davis, J. R. Walker, P. J. Finerty, F. Mackenzie, E. M. Newman, S. Dhe-Paganon
The Crystal Structures Of Human Calpains 1 And 9 Imply Diverse Mechanisms Of Action And Auto-Inhibition.
J. Mol. Biol. V. 366 216 2007
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 4)
Info
All Hetero Components
1a: BETA-MERCAPTOETHANOL (BMEa)
1b: BETA-MERCAPTOETHANOL (BMEb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BME
2
Ligand/Ion
BETA-MERCAPTOETHANOL
2
CA
2
Ligand/Ion
CALCIUM ION
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:284 , ASP A:291 , LEU A:312 , ASP A:314 , GLU A:316
BINDING SITE FOR RESIDUE CA A 1
2
AC2
SOFTWARE
LEU A:81 , GLY A:83 , ASP A:88 , GLU A:167 , HOH A:389
BINDING SITE FOR RESIDUE CA A 2
3
AC3
SOFTWARE
GLY A:95 , CYS A:97 , LEU A:100 , GLU A:174 , HOH A:376
BINDING SITE FOR RESIDUE BME A 3
4
AC4
SOFTWARE
GLU A:197 , THR A:200 , GLY A:202 , VAL A:203 , CYS A:334 , ASN A:335
BINDING SITE FOR RESIDUE BME A 4
[
close Site info
]
SAPs(SNPs)/Variants
(8, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_022188 (A102V, chain A, )
2: VAR_022189 (S122R, chain A, )
3: VAR_022190 (D164N, chain A, )
4: VAR_022191 (I234T, chain A, )
5: VAR_022192 (A239T, chain A, )
6: VAR_022193 (R277W, chain A, )
7: VAR_022194 (K322Q, chain A, )
8: VAR_022195 (H327Q, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_022188
A
102
V
CAN9_HUMAN
Polymorphism
12562749
A
A
102
V
2
UniProt
VAR_022189
S
122
R
CAN9_HUMAN
Polymorphism
28359608
A
S
122
R
3
UniProt
VAR_022190
D
164
N
CAN9_HUMAN
Polymorphism
28359632
A
D
164
N
4
UniProt
VAR_022191
I
234
T
CAN9_HUMAN
Polymorphism
28359644
A
I
234
T
5
UniProt
VAR_022192
A
239
T
CAN9_HUMAN
Polymorphism
28359647
A
A
239
T
6
UniProt
VAR_022193
R
277
W
CAN9_HUMAN
Polymorphism
28359655
A
R
277
W
7
UniProt
VAR_022194
K
322
Q
CAN9_HUMAN
Polymorphism
1933631
A
K
322
Q
8
UniProt
VAR_022195
H
327
Q
CAN9_HUMAN
Polymorphism
28359684
A
H
327
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: CALPAIN_CAT (A:42-337)
2: THIOL_PROTEASE_CYS (A:91-102)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CALPAIN_CAT
PS50203
Cysteine proteinase, calpain-type, catalytic domain profile.
CAN9_HUMAN
42-337
1
A:42-337
2
THIOL_PROTEASE_CYS
PS00139
Eukaryotic thiol (cysteine) proteases cysteine active site.
CAN9_HUMAN
91-102
1
A:91-102
[
close PROSITE info
]
Exons
(9, 9)
Info
All Exons
Exon 1.1a (A:28-71 (gaps))
Exon 1.2 (A:72-95)
Exon 1.3 (A:95-134)
Exon 1.4 (A:135-179)
Exon 1.5 (A:179-235)
Exon 1.6 (A:236-263)
Exon 1.7 (A:264-292)
Exon 1.8 (A:292-318)
Exon 1.9 (A:318-337)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1a
02: Boundary 1.1a/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8
09: Boundary 1.8/1.9
10: Boundary 1.9/1.10
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000271971
1a
ENSE00001070036
chr1:
230883130-230883455
326
CAN9_HUMAN
1-71
71
1
A:28-71 (gaps)
44
1.2
ENST00000271971
2
ENSE00000921431
chr1:
230891083-230891152
70
CAN9_HUMAN
72-95
24
1
A:72-95
24
1.3
ENST00000271971
3
ENSE00000961374
chr1:
230895258-230895376
119
CAN9_HUMAN
95-134
40
1
A:95-134
40
1.4
ENST00000271971
4
ENSE00000961375
chr1:
230898399-230898532
134
CAN9_HUMAN
135-179
45
1
A:135-179
45
1.5
ENST00000271971
5
ENSE00000961376
chr1:
230903287-230903455
169
CAN9_HUMAN
179-235
57
1
A:179-235
57
1.6
ENST00000271971
6
ENSE00000961377
chr1:
230904926-230905009
84
CAN9_HUMAN
236-263
28
1
A:236-263
28
1.7
ENST00000271971
7
ENSE00000961378
chr1:
230907760-230907845
86
CAN9_HUMAN
264-292
29
1
A:264-292
29
1.8
ENST00000271971
8
ENSE00000961379
chr1:
230910300-230910377
78
CAN9_HUMAN
292-318
27
1
A:292-318
27
1.9
ENST00000271971
9
ENSE00000961380
chr1:
230914719-230914879
161
CAN9_HUMAN
318-372
55
1
A:318-337
20
1.10
ENST00000271971
10
ENSE00000961381
chr1:
230915925-230916082
158
CAN9_HUMAN
372-424
53
0
-
-
1.11
ENST00000271971
11
ENSE00000961382
chr1:
230916246-230916454
209
CAN9_HUMAN
425-494
70
0
-
-
1.12
ENST00000271971
12
ENSE00000961383
chr1:
230921727-230921763
37
CAN9_HUMAN
494-506
13
0
-
-
1.13
ENST00000271971
13
ENSE00000961384
chr1:
230923268-230923348
81
CAN9_HUMAN
507-533
27
0
-
-
1.14
ENST00000271971
14
ENSE00000961385
chr1:
230925878-230925935
58
CAN9_HUMAN
534-553
20
0
-
-
1.15a
ENST00000271971
15a
ENSE00000961386
chr1:
230927610-230927674
65
CAN9_HUMAN
553-574
22
0
-
-
1.16
ENST00000271971
16
ENSE00000961387
chr1:
230928172-230928240
69
CAN9_HUMAN
575-597
23
0
-
-
1.17
ENST00000271971
17
ENSE00000961388
chr1:
230928596-230928674
79
CAN9_HUMAN
598-624
27
0
-
-
1.18
ENST00000271971
18
ENSE00000961389
chr1:
230930909-230931025
117
CAN9_HUMAN
624-663
40
0
-
-
1.19
ENST00000271971
19
ENSE00001416134
chr1:
230933908-230933966
59
CAN9_HUMAN
663-682
20
0
-
-
1.20b
ENST00000271971
20b
ENSE00001414530
chr1:
230937316-230937518
203
CAN9_HUMAN
683-690
8
0
-
-
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1ziva1 (A:28-337)
View:
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(
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(
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Folds
(
)
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)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cysteine proteinases
(392)
Superfamily
:
Cysteine proteinases
(392)
Family
:
Calpain large subunit, catalytic domain (domain II)
(19)
Protein domain
:
Calpain large subunit, catalytic domain (domain II)
(19)
Human (Homo sapiens), calpain 9 [TaxId: 9606]
(1)
1a
d1ziva1
A:28-337
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Peptidase_C2_1zivA01 (A:42-337)
View:
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Label:
Clans
(
)
(
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Families
(
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(
)
Organisms
(
)
(
)
Clan
:
Peptidase_CA
(169)
Family
:
Peptidase_C2
(15)
Homo sapiens (Human)
(5)
1a
Peptidase_C2-1zivA01
A:42-337
[
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