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1ZIS
Asym. Unit
Info
Asym.Unit (228 KB)
Biol.Unit 1 (113 KB)
Biol.Unit 2 (113 KB)
Biol.Unit 3, α-C (1.3 MB)
Biol.Unit 3 (1.3 MB)
Biol.Unit 4, α-C (1.3 MB)
Biol.Unit 4 (1.3 MB)
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(1)
Title
:
RECOMBINANT LUMAZINE SYNTHASE (HEXAGONAL FORM)
Authors
:
F. J. Lopez-Jaramillo
Date
:
27 Apr 05 (Deposition) - 03 Oct 06 (Release) - 16 Jan 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B,C,D,E (1x)
Biol. Unit 2: F,G,H,I,J (1x)
Biol. Unit 3: A,B,C,D,E,F,G,H,I,J (6x)
Biol. Unit 4: A,B,C,D,E,F,G,H,I,J (6x)
Keywords
:
Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. J. Lopez-Jaramillo
Crystal Structure Of Recombinant Lumazine Synthase (Hexagonal Form)
To Be Published
(for further references see the
PDB file header
)
[
close entry info
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Hetero Components
(2, 20)
Info
All Hetero Components
1a: 5-NITRO-6-RIBITYL-AMINO-2,4(1H,3H)... (INIa)
1b: 5-NITRO-6-RIBITYL-AMINO-2,4(1H,3H)... (INIb)
1c: 5-NITRO-6-RIBITYL-AMINO-2,4(1H,3H)... (INIc)
1d: 5-NITRO-6-RIBITYL-AMINO-2,4(1H,3H)... (INId)
1e: 5-NITRO-6-RIBITYL-AMINO-2,4(1H,3H)... (INIe)
1f: 5-NITRO-6-RIBITYL-AMINO-2,4(1H,3H)... (INIf)
1g: 5-NITRO-6-RIBITYL-AMINO-2,4(1H,3H)... (INIg)
1h: 5-NITRO-6-RIBITYL-AMINO-2,4(1H,3H)... (INIh)
1i: 5-NITRO-6-RIBITYL-AMINO-2,4(1H,3H)... (INIi)
1j: 5-NITRO-6-RIBITYL-AMINO-2,4(1H,3H)... (INIj)
2a: PHOSPHATE ION (PO4a)
2b: PHOSPHATE ION (PO4b)
2c: PHOSPHATE ION (PO4c)
2d: PHOSPHATE ION (PO4d)
2e: PHOSPHATE ION (PO4e)
2f: PHOSPHATE ION (PO4f)
2g: PHOSPHATE ION (PO4g)
2h: PHOSPHATE ION (PO4h)
2i: PHOSPHATE ION (PO4i)
2j: PHOSPHATE ION (PO4j)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
INI
10
Mod. Residue
5-NITRO-6-RIBITYL-AMINO-2,4(1H,3H)-PYRIMIDINEDIONE
2
PO4
10
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
]
Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:84 , ALA A:85 , THR A:86 , ARG E:127
BINDING SITE FOR RESIDUE PO4 A 501
02
AC2
SOFTWARE
ARG A:127 , GLY B:84 , ALA B:85 , THR B:86
BINDING SITE FOR RESIDUE PO4 B 502
03
AC3
SOFTWARE
ARG B:127 , GLY C:84 , ALA C:85 , THR C:86
BINDING SITE FOR RESIDUE PO4 C 503
04
AC4
SOFTWARE
ARG C:127 , GLY D:84 , ALA D:85 , THR D:86
BINDING SITE FOR RESIDUE PO4 D 504
05
AC5
SOFTWARE
ARG D:127 , GLY E:84 , ALA E:85 , THR E:86
BINDING SITE FOR RESIDUE PO4 D 505
06
AC6
SOFTWARE
ARG F:127 , GLY G:84 , ALA G:85 , THR G:86
BINDING SITE FOR RESIDUE PO4 G 506
07
AC7
SOFTWARE
ARG H:127 , GLY I:84 , ALA I:85 , THR I:86
BINDING SITE FOR RESIDUE PO4 I 507
08
AC8
SOFTWARE
ARG G:127 , GLY H:84 , ALA H:85 , THR H:86
BINDING SITE FOR RESIDUE PO4 H 508
09
AC9
SOFTWARE
ARG I:127 , GLY J:84 , ALA J:85 , THR J:86
BINDING SITE FOR RESIDUE PO4 J 509
10
BC1
SOFTWARE
GLY F:84 , ALA F:85 , THR F:86 , ARG J:127
BINDING SITE FOR RESIDUE PO4 F 510
11
BC2
SOFTWARE
PHE A:22 , ASN A:23 , GLY A:55 , ALA A:56 , PHE A:57 , GLU A:58 , THR A:80 , VAL A:81 , ILE A:82 , HIS A:88 , VAL A:92 , ILE E:112 , PHE E:113 , LYS E:135
BINDING SITE FOR RESIDUE INI A 200
12
BC3
SOFTWARE
ILE A:112 , PHE A:113 , LYS A:135 , PHE B:22 , ASN B:23 , GLY B:55 , ALA B:56 , PHE B:57 , GLU B:58 , THR B:80 , VAL B:81 , ILE B:82 , HIS B:88 , VAL B:92
BINDING SITE FOR RESIDUE INI B 201
13
BC4
SOFTWARE
ILE B:112 , PHE B:113 , PHE C:22 , ASN C:23 , GLY C:55 , ALA C:56 , PHE C:57 , GLU C:58 , THR C:80 , VAL C:81 , ILE C:82 , HIS C:88 , VAL C:92
BINDING SITE FOR RESIDUE INI C 202
14
BC5
SOFTWARE
ILE C:112 , PHE C:113 , LYS C:135 , PHE D:22 , ASN D:23 , GLY D:55 , ALA D:56 , PHE D:57 , GLU D:58 , THR D:80 , VAL D:81 , ILE D:82 , HIS D:88 , VAL D:92
BINDING SITE FOR RESIDUE INI D 203
15
BC6
SOFTWARE
ILE D:112 , PHE D:113 , LYS D:135 , PHE E:22 , ASN E:23 , GLY E:55 , ALA E:56 , PHE E:57 , GLU E:58 , THR E:80 , VAL E:81 , ILE E:82 , HIS E:88 , VAL E:92
BINDING SITE FOR RESIDUE INI E 204
16
BC7
SOFTWARE
PHE F:22 , ASN F:23 , GLY F:55 , ALA F:56 , PHE F:57 , GLU F:58 , THR F:80 , VAL F:81 , ILE F:82 , HIS F:88 , VAL F:92 , ILE J:112 , PHE J:113 , LYS J:135
BINDING SITE FOR RESIDUE INI F 205
17
BC8
SOFTWARE
ILE F:112 , PHE F:113 , PHE G:22 , ASN G:23 , GLY G:55 , ALA G:56 , PHE G:57 , GLU G:58 , THR G:80 , VAL G:81 , ILE G:82 , HIS G:88 , VAL G:92
BINDING SITE FOR RESIDUE INI G 206
18
BC9
SOFTWARE
ILE G:112 , PHE G:113 , LYS G:135 , PHE H:22 , ASN H:23 , GLY H:55 , ALA H:56 , PHE H:57 , GLU H:58 , THR H:80 , VAL H:81 , ILE H:82 , HIS H:88 , VAL H:92
BINDING SITE FOR RESIDUE INI H 207
19
CC1
SOFTWARE
ILE H:112 , PHE H:113 , PHE I:22 , ASN I:23 , GLY I:55 , ALA I:56 , PHE I:57 , GLU I:58 , THR I:80 , VAL I:81 , ILE I:82 , HIS I:88 , VAL I:92
BINDING SITE FOR RESIDUE INI I 208
20
CC2
SOFTWARE
ILE I:112 , PHE I:113 , PHE J:22 , ASN J:23 , GLY J:55 , ALA J:56 , PHE J:57 , GLU J:58 , THR J:80 , VAL J:81 , ILE J:82 , HIS J:88 , VAL J:92
BINDING SITE FOR RESIDUE INI J 209
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 10)
Info
All SCOP Domains
1a: SCOP_d1zisa_ (A:)
1b: SCOP_d1zisb_ (B:)
1c: SCOP_d1zisc_ (C:)
1d: SCOP_d1zisd_ (D:)
1e: SCOP_d1zise_ (E:)
1f: SCOP_d1zisf_ (F:)
1g: SCOP_d1zisg_ (G:)
1h: SCOP_d1zish_ (H:)
1i: SCOP_d1zisi_ (I:)
1j: SCOP_d1zisj_ (J:)
View:
Select:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Lumazine synthase
(27)
Superfamily
:
Lumazine synthase
(27)
Family
:
Lumazine synthase
(26)
Protein domain
:
Lumazine synthase
(19)
Bacillus subtilis [TaxId: 1423]
(2)
1a
d1zisa_
A:
1b
d1zisb_
B:
1c
d1zisc_
C:
1d
d1zisd_
D:
1e
d1zise_
E:
1f
d1zisf_
F:
1g
d1zisg_
G:
1h
d1zish_
H:
1i
d1zisi_
I:
1j
d1zisj_
J:
[
close SCOP info
]
CATH Domains
(1, 10)
Info
all CATH domains
1a: CATH_1zisA00 (A:1-154)
1b: CATH_1zisB00 (B:1-154)
1c: CATH_1zisC00 (C:1-154)
1d: CATH_1zisD00 (D:1-154)
1e: CATH_1zisE00 (E:1-154)
1f: CATH_1zisF00 (F:1-154)
1g: CATH_1zisG00 (G:1-154)
1h: CATH_1zisH00 (H:1-154)
1i: CATH_1zisI00 (I:1-154)
1j: CATH_1zisJ00 (J:1-154)
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)
(
)
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)
(
)
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.960, no name defined]
(36)
Bacillus subtilis. Organism_taxid: 1423.
(1)
1a
1zisA00
A:1-154
1b
1zisB00
B:1-154
1c
1zisC00
C:1-154
1d
1zisD00
D:1-154
1e
1zisE00
E:1-154
1f
1zisF00
F:1-154
1g
1zisG00
G:1-154
1h
1zisH00
H:1-154
1i
1zisI00
I:1-154
1j
1zisJ00
J:1-154
[
close CATH info
]
Pfam Domains
(1, 10)
Info
all PFAM domains
1a: PFAM_DMRL_synthase_1zisJ01 (J:10-153)
1b: PFAM_DMRL_synthase_1zisJ02 (J:10-153)
1c: PFAM_DMRL_synthase_1zisJ03 (J:10-153)
1d: PFAM_DMRL_synthase_1zisJ04 (J:10-153)
1e: PFAM_DMRL_synthase_1zisJ05 (J:10-153)
1f: PFAM_DMRL_synthase_1zisJ06 (J:10-153)
1g: PFAM_DMRL_synthase_1zisJ07 (J:10-153)
1h: PFAM_DMRL_synthase_1zisJ08 (J:10-153)
1i: PFAM_DMRL_synthase_1zisJ09 (J:10-153)
1j: PFAM_DMRL_synthase_1zisJ10 (J:10-153)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: DMRL_synthase]
(19)
Family
:
DMRL_synthase
(19)
Bacillus subtilis
(2)
1a
DMRL_synthase-1zisJ01
J:10-153
1b
DMRL_synthase-1zisJ02
J:10-153
1c
DMRL_synthase-1zisJ03
J:10-153
1d
DMRL_synthase-1zisJ04
J:10-153
1e
DMRL_synthase-1zisJ05
J:10-153
1f
DMRL_synthase-1zisJ06
J:10-153
1g
DMRL_synthase-1zisJ07
J:10-153
1h
DMRL_synthase-1zisJ08
J:10-153
1i
DMRL_synthase-1zisJ09
J:10-153
1j
DMRL_synthase-1zisJ10
J:10-153
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