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1ZH0
Biol. Unit 1
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Asym.Unit (59 KB)
Biol.Unit 1 (54 KB)
Biol.Unit 2 (105 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF L-3-(2-NAPTHYL)ALANINE-TRNA SYNTHETASE IN COMPLEX WITH L-3-(2-NAPTHYL)ALANINE
Authors
:
J. M. Turner, J. Graziano, G. Spraggon, P. G. Schultz
Date
:
22 Apr 05 (Deposition) - 04 Apr 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (2x)
Keywords
:
Structural Plasticity, Unnatural Amino Acid, Trna Synthetase, Npala, Ligase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
J. M. Turner, J. Graziano, G. Spraggon, P. G. Schultz
Structural Plasticity Of An Aminoacyl-Trna Synthetase Activ Site
Proc. Natl. Acad. Sci. Usa V. 103 6483 2006
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: BETA-(2-NAPHTHYL)-ALANINE (NALa)
2a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
NAL
1
Ligand/Ion
BETA-(2-NAPHTHYL)-ALANINE
2
TRS
1
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:32 , GLY A:34 , GLU A:36 , LEU A:65 , HIS A:70 , TYR A:151 , GLN A:155 , TYR A:161 , GLN A:173
BINDING SITE FOR RESIDUE NAL A 315
2
AC2
SOFTWARE
PHE A:35 , HIS A:42 , GLY A:44 , HIS A:45 , GLN A:48 , HOH A:332 , HOH A:370
BINDING SITE FOR RESIDUE TRS A 316
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 1)
Info
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1: AA_TRNA_LIGASE_I (A:37-46)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
AA_TRNA_LIGASE_I
PS00178
Aminoacyl-transfer RNA synthetases class-I signature.
SYY_METJA
37-46
1
A:37-46
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1zh0a_ (A:)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Adenine nucleotide alpha hydrolase-like
(440)
Superfamily
:
Nucleotidylyl transferase
(325)
Family
:
Class I aminoacyl-tRNA synthetases (RS), catalytic domain
(137)
Protein domain
:
automated matches
(22)
Methanocaldococcus jannaschii [TaxId: 2190]
(7)
1a
d1zh0a_
A:
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1zh0A01 (A:1-196)
2a: CATH_1zh0A02 (A:197-307)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1
(328)
Methanocaldococcus jannaschii. Organism_taxid: 2190.
(2)
1a
1zh0A01
A:1-196
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Tyrosyl-Transfer RNA Synthetase
(70)
Homologous Superfamily
:
Tyrosyl-Transfer RNA Synthetase
(70)
Methanocaldococcus jannaschii. Organism_taxid: 2190.
(1)
2a
1zh0A02
A:197-307
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_tRNA_synt_1b_1zh0A01 (A:24-300)
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Clan
:
HUP
(230)
Family
:
tRNA-synt_1b
(51)
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Meth
(7)
1a
tRNA-synt_1b-1zh0A01
A:24-300
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Chain A
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (59 KB)
Header - Asym.Unit
Biol.Unit 1 (54 KB)
Header - Biol.Unit 1
Biol.Unit 2 (105 KB)
Header - Biol.Unit 2
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