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1ZDT
Asym. Unit
Info
Asym.Unit (94 KB)
Biol.Unit 1 (44 KB)
Biol.Unit 2 (45 KB)
Biol.Unit 3 (87 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF HUMAN STEROIDOGENIC FACTOR-1
Authors
:
W. Wang, C. Zhang, A. Marimuthu, H. I. Krupka, M. Tabrizizad, R. Shelloe K. Eng, H. Nguyen, C. Settachatgul, B. Powell, M. V. Milburn, B. L. West
Date
:
14 Apr 05 (Deposition) - 24 May 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,P,Q
Biol. Unit 1: A,P (1x)
Biol. Unit 2: B,Q (1x)
Biol. Unit 3: A,B,P,Q (1x)
Keywords
:
Steroidogenic Factor-1, Nuclear Receptor, Pholpholipid, Phosphatidylethanolamine, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. Wang, C. Zhang, A. Marimuthu, H. I. Krupka, M. Tabrizizad, R. Shelloe, U. Mehra, K. Eng, H. Nguyen, C. Settachatgul, B. Powell, M. V. Milburn, B. L. West
The Crystal Structures Of Human Steroidogenic Factor-1 And Liver Receptor Homologue-1
Proc. Natl. Acad. Sci. Usa V. 102 7505 2005
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: DI-PALMITOYL-3-SN-PHOSPHATIDYLETHA... (PEFa)
1b: DI-PALMITOYL-3-SN-PHOSPHATIDYLETHA... (PEFb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
PEF
2
Ligand/Ion
DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:260 , PHE A:262 , LEU A:265 , HIS A:310 , VAL A:336 , GLY A:341 , LEU A:344 , LEU A:347 , ALA A:433 , TYR A:436 , LYS A:440 , HOH A:1029 , HOH A:1114 , ARG B:281
BINDING SITE FOR RESIDUE PEF A 1001
2
AC2
SOFTWARE
PHE B:262 , HIS B:310 , VAL B:336 , GLN B:339 , ALA B:340 , GLY B:341 , LEU B:344 , LEU B:347 , TYR B:436 , LYS B:440 , HOH B:1050 , HOH B:1115
BINDING SITE FOR RESIDUE PEF B 1002
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SAPs(SNPs)/Variants
(4, 7)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_065869 (D238N, chain A/B, )
2: VAR_016983 (R255L, chain B, )
3: VAR_062970 (D293N, chain A/B, )
4: VAR_063258 (L437Q, chain A/B, )
View:
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_065869
D
238
N
STF1_HUMAN
Disease (SPGF8)
---
A/B
D
238
N
2
UniProt
VAR_016983
R
255
L
STF1_HUMAN
Disease (ACIWOD)
---
B
R
255
L
3
UniProt
VAR_062970
D
293
N
STF1_HUMAN
Disease (POF7)
---
A/B
D
293
N
4
UniProt
VAR_063258
L
437
Q
STF1_HUMAN
Disease (SRXY3)
---
A/B
L
437
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(4, 8)
Info
All Exons
Exon 1.6b (A:221-290 (gaps) | B:221-290)
Exon 1.7 (A:291-330 | B:291-330)
Exon 1.8 (A:331-380 | B:331-380)
Exon 1.9b (A:380-460 | B:380-459)
View:
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All Exon Boundaries
1: Boundary 1.4/1.6b
2: Boundary 1.6b/1.7
3: Boundary 1.7/1.8
4: Boundary 1.8/1.9b
5: Boundary 1.9b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000373588
1
ENSE00001460970
chr9:
127269709-127269528
182
STF1_HUMAN
-
0
0
-
-
1.3
ENST00000373588
3
ENSE00001460969
chr9:
127265689-127265573
117
STF1_HUMAN
1-34
34
0
-
-
1.4
ENST00000373588
4
ENSE00000726938
chr9:
127265499-127265358
142
STF1_HUMAN
35-82
48
0
-
-
1.6b
ENST00000373588
6b
ENSE00000726937
chr9:
127262994-127262369
626
STF1_HUMAN
82-290
209
2
A:221-290 (gaps)
B:221-290
70
70
1.7
ENST00000373588
7
ENSE00000726936
chr9:
127255428-127255309
120
STF1_HUMAN
291-330
40
2
A:291-330
B:291-330
40
40
1.8
ENST00000373588
8
ENSE00000726934
chr9:
127253507-127253360
148
STF1_HUMAN
331-380
50
2
A:331-380
B:331-380
50
50
1.9b
ENST00000373588
9b
ENSE00001230484
chr9:
127245284-127243516
1769
STF1_HUMAN
380-461
82
2
A:380-460
B:380-459
81
80
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SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1zdtB00 (B:221-459)
1b: CATH_1zdtA00 (A:221-460)
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)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Retinoid X Receptor
(409)
Homologous Superfamily
:
Retinoid X Receptor
(409)
Human (Homo sapiens)
(337)
1a
1zdtB00
B:221-459
1b
1zdtA00
A:221-460
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Hormone_recep_1zdtB01 (B:249-455)
1b: PFAM_Hormone_recep_1zdtB02 (B:249-455)
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(
)
Clan
:
no clan defined [family: Hormone_recep]
(290)
Family
:
Hormone_recep
(290)
Homo sapiens (Human)
(244)
1a
Hormone_recep-1zdtB01
B:249-455
1b
Hormone_recep-1zdtB02
B:249-455
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (94 KB)
Header - Asym.Unit
Biol.Unit 1 (44 KB)
Header - Biol.Unit 1
Biol.Unit 2 (45 KB)
Header - Biol.Unit 2
Biol.Unit 3 (87 KB)
Header - Biol.Unit 3
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