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1ZDS
Asym. Unit
Info
Asym.Unit (182 KB)
Biol.Unit 1 (177 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MET150GLY AFNIR WITH ACETAMIDE BOUND
Authors
:
H. J. Wijma, I. S. Macpherson, M. Alexandre, R. E. M. Diederix, G. W. Canters, M. E. P. Murphy, M. P. Verbeet
Date
:
14 Apr 05 (Deposition) - 28 Mar 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.55
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Metal-Binding, Nitrate Assimiliation, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
H. J. Wijma, I. Macpherson, M. Alexandre, R. E. Diederix, G. W. Canters, M. E. Murphy, M. P. Verbeet
A Rearranging Ligand Enables Allosteric Control Of Catalytic Activity In Copper-Containing Nitrite Reductase.
J. Mol. Biol. V. 358 1081 2006
(for further references see the
PDB file header
)
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Hetero Components
(2, 12)
Info
All Hetero Components
1a: ACETAMIDE (ACMa)
1b: ACETAMIDE (ACMb)
1c: ACETAMIDE (ACMc)
1d: ACETAMIDE (ACMd)
1e: ACETAMIDE (ACMe)
1f: ACETAMIDE (ACMf)
2a: COPPER (II) ION (CUa)
2b: COPPER (II) ION (CUb)
2c: COPPER (II) ION (CUc)
2d: COPPER (II) ION (CUd)
2e: COPPER (II) ION (CUe)
2f: COPPER (II) ION (CUf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACM
6
Ligand/Ion
ACETAMIDE
2
CU
6
Ligand/Ion
COPPER (II) ION
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
MET A:62 , HIS A:95 , CYS A:136 , HIS A:145
BINDING SITE FOR RESIDUE CU A 1501
02
AC2
SOFTWARE
HIS A:100 , HIS A:135 , HOH A:2911 , HIS B:306
BINDING SITE FOR RESIDUE CU A 1502
03
AC3
SOFTWARE
MET B:62 , HIS B:95 , CYS B:136 , HIS B:145
BINDING SITE FOR RESIDUE CU B 1503
04
AC4
SOFTWARE
HIS B:100 , HIS B:135 , HOH B:2874 , HIS C:306
BINDING SITE FOR RESIDUE CU B 1504
05
AC5
SOFTWARE
MET C:62 , HIS C:95 , CYS C:136 , HIS C:145
BINDING SITE FOR RESIDUE CU C 1505
06
AC6
SOFTWARE
HIS A:306 , ASP C:98 , HIS C:100 , HIS C:135
BINDING SITE FOR RESIDUE CU C 1506
07
AC7
SOFTWARE
GLU A:47 , HIS A:60 , MET A:62 , LEU A:93 , HIS A:95 , PRO A:199 , HOH A:2529 , HOH A:2530
BINDING SITE FOR RESIDUE ACM A 2500
08
AC8
SOFTWARE
HIS B:60 , MET B:62 , HIS B:95 , HIS B:145 , HOH B:2535 , HOH B:2716
BINDING SITE FOR RESIDUE ACM B 2501
09
AC9
SOFTWARE
GLU C:47 , HIS C:60 , MET C:62 , LEU C:93 , HIS C:95 , PRO C:199 , HOH C:2551 , HOH C:2723
BINDING SITE FOR RESIDUE ACM C 2502
10
BC1
SOFTWARE
HOH A:2561 , HOH A:2645 , HOH A:2674 , HOH A:2769 , ALA B:302
BINDING SITE FOR RESIDUE ACM A 2503
11
BC2
SOFTWARE
HOH B:2560 , HOH B:2647
BINDING SITE FOR RESIDUE ACM B 2504
12
BC3
SOFTWARE
ALA A:302 , HOH C:2576 , HOH C:2659 , HOH C:2683
BINDING SITE FOR RESIDUE ACM C 2505
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1zdsa1 (A:5-161)
1b: SCOP_d1zdsb1 (B:4-161)
1c: SCOP_d1zdsb2 (B:162-339)
1d: SCOP_d1zdsc1 (C:4-161)
1e: SCOP_d1zdsc2 (C:162-339)
1f: SCOP_d1zdsa2 (A:162-339)
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Protein Domains
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)
(
)
Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
automated matches
(57)
Protein domain
:
automated matches
(57)
Alcaligenes faecalis [TaxId: 511]
(9)
1a
d1zdsa1
A:5-161
1b
d1zdsb1
B:4-161
1c
d1zdsb2
B:162-339
1d
d1zdsc1
C:4-161
1e
d1zdsc2
C:162-339
1f
d1zdsa2
A:162-339
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1zdsA01 (A:11-158)
1b: CATH_1zdsB01 (B:11-158)
1c: CATH_1zdsC01 (C:11-158)
1d: CATH_1zdsA02 (A:159-325)
1e: CATH_1zdsB02 (B:159-325)
1f: CATH_1zdsC02 (C:159-325)
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)
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)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Cupredoxins - blue copper proteins
(420)
Alcaligenes faecalis. Organism_taxid: 511.
(13)
1a
1zdsA01
A:11-158
1b
1zdsB01
B:11-158
1c
1zdsC01
C:11-158
1d
1zdsA02
A:159-325
1e
1zdsB02
B:159-325
1f
1zdsC02
C:159-325
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Pfam Domains
(2, 6)
Info
all PFAM domains
1a: PFAM_Cu_oxidase_1zdsC01 (C:174-326)
1b: PFAM_Cu_oxidase_1zdsC02 (C:174-326)
1c: PFAM_Cu_oxidase_1zdsC03 (C:174-326)
2a: PFAM_Cu_oxidase_3_1zdsC04 (C:44-161)
2b: PFAM_Cu_oxidase_3_1zdsC05 (C:44-161)
2c: PFAM_Cu_oxidase_3_1zdsC06 (C:44-161)
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Clans
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Clan
:
CU_oxidase
(192)
Family
:
Cu-oxidase
(74)
Alcaligenes faecalis
(18)
1a
Cu-oxidase-1zdsC01
C:174-326
1b
Cu-oxidase-1zdsC02
C:174-326
1c
Cu-oxidase-1zdsC03
C:174-326
Family
:
Cu-oxidase_3
(79)
Alcaligenes faecalis
(18)
2a
Cu-oxidase_3-1zdsC04
C:44-161
2b
Cu-oxidase_3-1zdsC05
C:44-161
2c
Cu-oxidase_3-1zdsC06
C:44-161
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Asymmetric Unit 1
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Asym.Unit (182 KB)
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