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Getting 'Biological Unit' information from database.
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1ZD2
Biol. Unit 1
Info
Asym.Unit (89 KB)
Biol.Unit 1 (164 KB)
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(1)
Title
:
HUMAN SOLUBLE EPOXIDE HYDROLASE 4-(3-CYCLOHEXYLURIEDO)-ETHANOIC ACID COMPLEX
Authors
:
G. A. Gomez, C. Morisseau, B. D. Hammock, D. W. Christianson
Date
:
14 Apr 05 (Deposition) - 07 Mar 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : P
Biol. Unit 1: P (2x)
Keywords
:
Domain-Swapped Dimer, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. A. Gomez, C. Morisseau, B. D. Hammock, D. W. Christianson
Human Soluble Epoxide Hydrolase: Structural Basis Of Inhibition By 4-(3-Cyclohexylureido)-Carboxylic Acids
Protein Sci. V. 15 58 2006
(for further references see the
PDB file header
)
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
2a: N-[(CYCLOHEXYLAMINO)CARBONYL]GLYCI... (NC3a)
3a: PHOSPHATE ION (PO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MG
-1
Ligand/Ion
MAGNESIUM ION
2
NC3
2
Ligand/Ion
N-[(CYCLOHEXYLAMINO)CARBONYL]GLYCINE
3
PO4
2
Ligand/Ion
PHOSPHATE ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP P:9 , ASP P:11 , ASP P:184 , ASP P:185 , PO4 P:900
BINDING SITE FOR RESIDUE MG P 800
2
AC2
SOFTWARE
ASP P:9 , ASP P:11 , THR P:123 , ASN P:124 , LYS P:160 , MG P:800
BINDING SITE FOR RESIDUE PO4 P 900
3
AC3
SOFTWARE
PHE P:265 , ASP P:333 , TRP P:334 , MET P:337 , TYR P:381 , MET P:418 , TYR P:465 , VAL P:497 , HIS P:523
BINDING SITE FOR RESIDUE NC3 P 700
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SAPs(SNPs)/Variants
(9, 18)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_055392 (G21A, chain P, )
2: VAR_055393 (R52Q, chain P, )
3: VAR_051059 (K55R, chain P, )
4: VAR_033991 (R103C, chain P, )
5: VAR_055394 (C154Y, chain P, )
6: VAR_055395 (P223L, chain P, )
7: VAR_014852 (R285Q, chain P, )
8: VAR_055396 (M367V, chain P, )
9: VAR_055397 (E469G, chain P, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_055392
G
21
A
HYES_HUMAN
Polymorphism
---
P
G
21
A
2
UniProt
VAR_055393
R
52
Q
HYES_HUMAN
Polymorphism
72475803
P
R
52
Q
3
UniProt
VAR_051059
K
55
R
HYES_HUMAN
Polymorphism
41507953
P
K
55
R
4
UniProt
VAR_033991
R
103
C
HYES_HUMAN
Polymorphism
17057255
P
R
103
C
5
UniProt
VAR_055394
C
154
Y
HYES_HUMAN
Polymorphism
57699806
P
C
154
Y
6
UniProt
VAR_055395
P
225
L
HYES_HUMAN
Polymorphism
---
P
P
223
L
7
UniProt
VAR_014852
R
287
Q
HYES_HUMAN
Polymorphism
751141
P
R
285
Q
8
UniProt
VAR_055396
M
369
V
HYES_HUMAN
Polymorphism
72475894
P
M
367
V
9
UniProt
VAR_055397
E
470
G
HYES_HUMAN
Polymorphism
68053459
P
E
469
G
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1zd2p2 (P:226-547)
2a: SCOP_d1zd2p1 (P:2-225)
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Classes
(
)
(
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Folds
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)
(
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Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
alpha/beta-Hydrolases
(971)
Superfamily
:
alpha/beta-Hydrolases
(971)
Family
:
Epoxide hydrolase
(20)
Protein domain
:
Mammalian epoxide hydrolase, C-terminal domain
(16)
Human (Homo sapiens) [TaxId: 9606]
(12)
1a
d1zd2p2
P:226-547
Fold
:
HAD-like
(349)
Superfamily
:
HAD-like
(349)
Family
:
YihX-like
(17)
Protein domain
:
Epoxide hydrolase, N-terminal domain
(16)
Human (Homo sapiens) [TaxId: 9606]
(12)
2a
d1zd2p1
P:2-225
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CATH Domains
(3, 3)
Info
all CATH domains
1a: CATH_1zd2P01 (P:2-17,P:98-218)
2a: CATH_1zd2P03 (P:235-547)
3a: CATH_1zd2P02 (P:18-97)
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)
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)
Architectures
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1000, no name defined]
(211)
Human (Homo sapiens)
(42)
1a
1zd2P01
P:2-17,P:98-218
Homologous Superfamily
:
[code=3.40.50.1820, no name defined]
(692)
Human (Homo sapiens)
(118)
2a
1zd2P03
P:235-547
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
DNA polymerase; domain 1
(617)
Homologous Superfamily
:
Putative phosphatase; domain 2
(65)
Human (Homo sapiens)
(9)
3a
1zd2P02
P:18-97
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Abhydrolase_1_1zd2P01 (P:284-539)
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Clans
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)
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)
Clan
:
AB_hydrolase
(347)
Family
:
Abhydrolase_1
(28)
Homo sapiens (Human)
(7)
1a
Abhydrolase_1-1zd2P01
P:284-539
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Protein & NOT PROSITE
Chain P
Asymmetric Unit 1
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Asym.Unit (89 KB)
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Header - Biol.Unit 1
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