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1ZCM
Asym. Unit
Info
Asym.Unit (63 KB)
Biol.Unit 1 (59 KB)
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(1)
Title
:
HUMAN CALPAIN PROTEASE CORE INHIBITED BY ZLLYCH2F
Authors
:
Q. Li, R. P. Hanzlik, R. F. Weaver, E. Schonbrunn
Date
:
12 Apr 05 (Deposition) - 31 Jan 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Calcium Binding, Hydrolase, Protease, Thiol Protease
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Q. Li, R. P. Hanzlik, R. F. Weaver, E. Schonbrunn
Molecular Mode Of Action Of A Covalently Inhibiting Peptidomimetic On The Human Calpain Protease Core
Biochemistry V. 45 701 2006
(for further references see the
PDB file header
)
[
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]
Hetero Components
(2, 3)
Info
All Hetero Components
1a: N-[(BENZYLOXY)CARBONYL]LEUCYL-N~1~... (C1Na)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
C1N
1
Ligand/Ion
N-[(BENZYLOXY)CARBONYL]LEUCYL-N~1~-[3-FLUORO-1-(4-HYDROXYBENZYL)-2-OXOPROPYL]LEUCINAMIDE
2
CA
2
Ligand/Ion
CALCIUM ION
[
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:302 , ASP A:309 , MET A:329 , ASP A:331 , GLU A:333 , HOH A:1184
BINDING SITE FOR RESIDUE CA A 1001
2
AC2
SOFTWARE
VAL A:99 , GLY A:101 , ASP A:106 , GLU A:185 , HOH A:1185 , HOH A:1197
BINDING SITE FOR RESIDUE CA A 1002
3
AC3
SOFTWARE
GLN A:109 , GLY A:113 , ASP A:114 , CYS A:115 , TRP A:116 , SER A:206 , GLY A:207 , GLY A:208 , THR A:210 , GLU A:261 , GLY A:271 , HIS A:272 , TYR A:284 , ARG A:285 , GLN A:287 , VAL A:288 , HOH A:1319
BINDING SITE FOR RESIDUE C1N A 1115
[
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_021085 (T103A, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_021085
T
103
A
CAN1_HUMAN
Polymorphism
17885718
A
T
103
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: CALPAIN_CAT (A:55-353)
2: THIOL_PROTEASE_CYS (A:109-120)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CALPAIN_CAT
PS50203
Cysteine proteinase, calpain-type, catalytic domain profile.
CAN1_HUMAN
55-354
1
A:55-353
2
THIOL_PROTEASE_CYS
PS00139
Eukaryotic thiol (cysteine) proteases cysteine active site.
CAN1_HUMAN
109-120
1
A:109-120
[
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Exons
(9, 9)
Info
All Exons
Exon 1.7g (A:33-89)
Exon 1.8 (A:90-113)
Exon 1.9f (A:113-152)
Exon 1.10g (A:153-197)
Exon 1.10i (A:197-253)
Exon 1.11a (A:254-281)
Exon 1.12d (A:282-310)
Exon 1.13b (A:310-335)
Exon 1.14b (A:335-353)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.6a/1.7g
02: Boundary 1.7g/1.8
03: Boundary 1.8/1.9f
04: Boundary 1.9f/1.10g
05: Boundary 1.10g/1.10i
06: Boundary 1.10i/1.11a
07: Boundary 1.11a/1.12d
08: Boundary 1.12d/1.13b
09: Boundary 1.13b/1.14b
10: Boundary 1.14b/1.17
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.6a
ENST00000279247
6a
ENSE00001535113
chr11:
64949343-64949484
142
CAN1_HUMAN
-
0
0
-
-
1.7g
ENST00000279247
7g
ENSE00002177234
chr11:
64950172-64950439
268
CAN1_HUMAN
1-89
89
1
A:33-89
57
1.8
ENST00000279247
8
ENSE00000731735
chr11:
64950599-64950668
70
CAN1_HUMAN
90-113
24
1
A:90-113
24
1.9f
ENST00000279247
9f
ENSE00002188401
chr11:
64950945-64951063
119
CAN1_HUMAN
113-152
40
1
A:113-152
40
1.10g
ENST00000279247
10g
ENSE00001273856
chr11:
64953388-64953521
134
CAN1_HUMAN
153-197
45
1
A:153-197
45
1.10i
ENST00000279247
10i
ENSE00001192601
chr11:
64953641-64953809
169
CAN1_HUMAN
197-253
57
1
A:197-253
57
1.11a
ENST00000279247
11a
ENSE00001119935
chr11:
64954686-64954769
84
CAN1_HUMAN
254-281
28
1
A:254-281
28
1.12d
ENST00000279247
12d
ENSE00001119924
chr11:
64955426-64955511
86
CAN1_HUMAN
282-310
29
1
A:282-310
29
1.13b
ENST00000279247
13b
ENSE00001170399
chr11:
64955885-64955959
75
CAN1_HUMAN
310-335
26
1
A:310-335
26
1.14b
ENST00000279247
14b
ENSE00001273808
chr11:
64956057-64956217
161
CAN1_HUMAN
335-389
55
1
A:335-353
19
1.17
ENST00000279247
17
ENSE00001273802
chr11:
64972154-64972329
176
CAN1_HUMAN
389-447
59
0
-
-
1.18a
ENST00000279247
18a
ENSE00001735163
chr11:
64973181-64973192
12
CAN1_HUMAN
448-451
4
0
-
-
1.19c
ENST00000279247
19c
ENSE00001192571
chr11:
64973934-64974145
212
CAN1_HUMAN
452-522
71
0
-
-
1.20
ENST00000279247
20
ENSE00001119914
chr11:
64974251-64974290
40
CAN1_HUMAN
522-535
14
0
-
-
1.21
ENST00000279247
21
ENSE00001170362
chr11:
64975526-64975591
66
CAN1_HUMAN
536-557
22
0
-
-
1.22
ENST00000279247
22
ENSE00001273772
chr11:
64975676-64975733
58
CAN1_HUMAN
558-577
20
0
-
-
1.23e
ENST00000279247
23e
ENSE00001273768
chr11:
64976794-64976858
65
CAN1_HUMAN
577-598
22
0
-
-
1.23f
ENST00000279247
23f
ENSE00001273762
chr11:
64977320-64977388
69
CAN1_HUMAN
599-621
23
0
-
-
1.23h
ENST00000279247
23h
ENSE00001170341
chr11:
64977489-64977567
79
CAN1_HUMAN
622-648
27
0
-
-
1.24b
ENST00000279247
24b
ENSE00001119936
chr11:
64977807-64977923
117
CAN1_HUMAN
648-687
40
0
-
-
1.25a
ENST00000279247
25a
ENSE00001170334
chr11:
64978285-64978343
59
CAN1_HUMAN
687-706
20
0
-
-
1.25f
ENST00000279247
25f
ENSE00001338286
chr11:
64978731-64979476
746
CAN1_HUMAN
707-714
8
0
-
-
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1zcma1 (A:33-353)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cysteine proteinases
(392)
Superfamily
:
Cysteine proteinases
(392)
Family
:
Calpain large subunit, catalytic domain (domain II)
(19)
Protein domain
:
Calpain large subunit, catalytic domain (domain II)
(19)
Human (Homo sapiens), mu type [TaxId: 9606]
(2)
1a
d1zcma1
A:33-353
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Peptidase_C2_1zcmA01 (A:55-353)
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Clans
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Families
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(
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Organisms
(
)
(
)
Clan
:
Peptidase_CA
(169)
Family
:
Peptidase_C2
(15)
Homo sapiens (Human)
(5)
1a
Peptidase_C2-1zcmA01
A:55-353
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Chain A
Asymmetric Unit 1
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