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1ZC3
Asym. Unit
Info
Asym.Unit (109 KB)
Biol.Unit 1 (54 KB)
Biol.Unit 2 (53 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE RAL-BINDING DOMAIN OF EXO84 IN COMPLEX WITH THE ACTIVE RALA
Authors
:
R. Jin, J. R. Junutula, H. T. Matern, K. E. Ervin, R. H. Scheller, A. T. Brunger
Date
:
10 Apr 05 (Deposition) - 14 Jun 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,C (1x)
Keywords
:
Exocytosis, Small Gtpase, Gtp-Binding Protein, , Signaling Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Jin, J. R. Junutula, H. T. Matern, K. E. Ervin, R. H. Scheller, A. T. Brunger
Exo84 And Sec5 Are Competitive Regulatory Sec6/8 Effectors To The Rala Gtpase.
Embo J. V. 24 2064 2005
(for further references see the
PDB file header
)
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: PHOSPHOAMINOPHOSPHONIC ACID-GUANYL... (GNPa)
1b: PHOSPHOAMINOPHOSPHONIC ACID-GUANYL... (GNPb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GNP
2
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
2
MG
2
Ligand/Ion
MAGNESIUM ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:28 , THR A:46 , GNP A:700 , HOH A:816 , HOH A:819
BINDING SITE FOR RESIDUE MG A 500
2
AC2
SOFTWARE
SER C:28 , THR C:46 , GNP C:800 , HOH C:921 , HOH C:927
BINDING SITE FOR RESIDUE MG C 600
3
AC3
SOFTWARE
GLY A:23 , GLY A:24 , VAL A:25 , GLY A:26 , LYS A:27 , SER A:28 , ALA A:29 , PHE A:39 , VAL A:40 , GLU A:41 , ASP A:42 , TYR A:43 , THR A:46 , ALA A:70 , GLY A:71 , ASN A:127 , LYS A:128 , ASP A:130 , LEU A:131 , SER A:157 , ALA A:158 , LYS A:159 , MG A:500 , HOH A:741 , HOH A:816 , HOH A:819
BINDING SITE FOR RESIDUE GNP A 700
4
AC4
SOFTWARE
GLY C:23 , GLY C:24 , VAL C:25 , GLY C:26 , LYS C:27 , SER C:28 , ALA C:29 , PHE C:39 , VAL C:40 , GLU C:41 , TYR C:43 , GLU C:44 , THR C:46 , GLY C:71 , ASN C:127 , LYS C:128 , ASP C:130 , LEU C:131 , SER C:157 , ALA C:158 , LYS C:159 , MG C:600 , HOH C:890 , HOH C:909 , HOH C:910 , HOH C:921 , HOH C:927
BINDING SITE FOR RESIDUE GNP C 800
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PH_DOMAIN (B:173-273,D:173-273)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PH_DOMAIN
PS50003
PH domain profile.
EXOC8_RAT
173-273
2
B:173-273
D:173-273
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Exons
(5, 10)
Info
All Exons
Exon 1.1 (B:171-279 | D:171-279)
Exon 2.3a (A:11-38 | C:11-38)
Exon 2.4b (A:39-108 | C:39-108)
Exon 2.5 (A:108-166 | C:108-166)
Exon 2.8d (A:167-183 | C:167-183)
View:
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
3: Boundary 2.1a/2.3a
4: Boundary 2.3a/2.4b
5: Boundary 2.4b/2.5
6: Boundary 2.5/2.8d
7: Boundary 2.8d/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000026757
1
ENSRNOE00000192200
chr19:
55068607-55066457
2151
EXOC8_RAT
1-716
716
2
B:171-279
D:171-279
109
109
2.1a
ENST00000005257
1a
ENSE00001829077
chr7:
39663082-39663424
343
RALA_HUMAN
-
0
0
-
-
2.3a
ENST00000005257
3a
ENSE00000832451
chr7:
39726230-39726380
151
RALA_HUMAN
1-38
38
2
A:11-38
C:11-38
28
28
2.4b
ENST00000005257
4b
ENSE00000679279
chr7:
39729981-39730189
209
RALA_HUMAN
39-108
70
2
A:39-108
C:39-108
70
70
2.5
ENST00000005257
5
ENSE00000679282
chr7:
39736284-39736458
175
RALA_HUMAN
108-166
59
2
A:108-166
C:108-166
59
59
2.8d
ENST00000005257
8d
ENSE00001270055
chr7:
39745722-39747723
2002
RALA_HUMAN
167-206
40
2
A:167-183
C:167-183
17
17
[
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SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1zc3b_ (B:)
1b: SCOP_d1zc3d_ (D:)
2a: SCOP_d1zc3a1 (A:11-183)
2b: SCOP_d1zc3c_ (C:)
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Protein Domains
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Class
:
All beta proteins
(24004)
Fold
:
PH domain-like barrel
(258)
Superfamily
:
PH domain-like
(257)
Family
:
Pleckstrin-homology domain (PH domain)
(102)
Protein domain
:
automated matches
(10)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(2)
1a
d1zc3b_
B:
1b
d1zc3d_
D:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
Ras-related protein RalA
(8)
Human (Homo sapiens) [TaxId: 9606]
(5)
2a
d1zc3a1
A:11-183
2b
d1zc3c_
C:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1zc3A00 (A:11-183)
1b: CATH_1zc3C00 (C:11-183)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
1zc3A00
A:11-183
1b
1zc3C00
C:11-183
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Ras_1zc3C01 (C:16-177)
1b: PFAM_Ras_1zc3C02 (C:16-177)
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Clan
:
P-loop_NTPase
(1112)
Family
:
Ras
(176)
Homo sapiens (Human)
(141)
1a
Ras-1zc3C01
C:16-177
1b
Ras-1zc3C02
C:16-177
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Asymmetric Unit 1
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Asym.Unit (109 KB)
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