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Asym. Unit
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Asym.Unit (464 KB)
Biol.Unit 1 (911 KB)
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(1)
Title
:
STRUCTURE OF THE 4_601_167 TETRANUCLEOSOME
Authors
:
T. Schalch, S. Duda, D. F. Sargent, T. J. Richmond
Date
:
08 Apr 05 (Deposition) - 12 Jul 05 (Release) - 14 May 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
9.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,a,b,c,d,e,f,g,h
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,a,b,c,d,e,f,g,h (2x)
Keywords
:
Tetranucleosome, Nucleosome, Chromatin, Chromatin Fiber, Histone, Protein-Dna Interaction, Nucleoprotein, Supercoiled Dna, Nucleosome Core, Protein-Dna Complex, Structural Protein-Dna Complex
(Keyword Search:
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Reference
:
T. Schalch, S. Duda, D. F. Sargent, T. J. Richmond
X-Ray Structure Of A Tetranucleosome And Its Implications For The Chromatin Fibre.
Nature V. 436 138 2005
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Hetero Components
(0, 0)
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Sites
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(4, 14)
Info
All PROSITE Patterns/Profiles
1: HISTONE_H4 (F:16-18,f:16-18)
2: HISTONE_H2A (C:21-27,G:21-27,c:21-27,g:21-27)
3: HISTONE_H3_2 (A:66-74,E:66-74,a:66-74,e:66-74)
4: HISTONE_H2B (D:89-111,H:89-111,d:89-111,h:89-11...)
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HISTONE_H4
PS00047
Histone H4 signature.
H4_XENLA
15-19
2
F:16-18
f:16-18
2
HISTONE_H2A
PS00046
Histone H2A signature.
H2A1_XENLA
22-28
4
C:21-27
G:21-27
c:21-27
g:21-27
3
HISTONE_H3_2
PS00959
Histone H3 signature 2.
H32_XENLA
67-75
4
A:66-74
E:66-74
a:66-74
e:66-74
4
HISTONE_H2B
PS00357
Histone H2B signature.
H2B11_XENLA
93-115
4
D:89-111
H:89-111
d:89-111
h:89-111
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 5)
Info
All SCOP Domains
1a: SCOP_d1zbbd1 (D:8-122)
2a: SCOP_d1zbba1 (A:39-135)
2b: SCOP_d1zbbe1 (E:39-135)
3a: SCOP_d1zbbb1 (B:24-102)
3b: SCOP_d1zbbf1 (F:24-102)
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Class
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All alpha proteins
(14657)
Fold
:
Histone-fold
(277)
Superfamily
:
Histone-fold
(277)
Family
:
Nucleosome core histones
(247)
Protein domain
:
Histone H2B
(48)
African clawed frog (Xenopus laevis) [TaxId: 8355]
(35)
1a
d1zbbd1
D:8-122
Protein domain
:
Histone H3
(58)
African clawed frog (Xenopus laevis) [TaxId: 8355]
(39)
2a
d1zbba1
A:39-135
2b
d1zbbe1
E:39-135
Protein domain
:
Histone H4
(60)
African clawed frog (Xenopus laevis) [TaxId: 8355]
(38)
3a
d1zbbb1
B:24-102
3b
d1zbbf1
F:24-102
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CATH Domains
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Pfam Domains
(1, 16)
Info
all PFAM domains
1a: PFAM_Histone_1zbbG01 (G:17-90)
1b: PFAM_Histone_1zbbG02 (G:17-90)
1c: PFAM_Histone_1zbbG03 (G:17-90)
1d: PFAM_Histone_1zbbG04 (G:17-90)
1e: PFAM_Histone_1zbbh01 (h:28-98)
1f: PFAM_Histone_1zbbh02 (h:28-98)
1g: PFAM_Histone_1zbbh03 (h:28-98)
1h: PFAM_Histone_1zbbh04 (h:28-98)
1i: PFAM_Histone_1zbbE01 (E:57-131)
1j: PFAM_Histone_1zbbE02 (E:57-131)
1k: PFAM_Histone_1zbbE03 (E:57-131)
1l: PFAM_Histone_1zbbE04 (E:57-131)
1m: PFAM_Histone_1zbbF01 (F:24-93)
1n: PFAM_Histone_1zbbF02 (F:24-93)
1o: PFAM_Histone_1zbbF03 (F:24-93)
1p: PFAM_Histone_1zbbF04 (F:24-93)
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Clan
:
Histone
(49)
Family
:
Histone
(46)
Xenopus laevis (African clawed frog)
(32)
1a
Histone-1zbbG01
G:17-90
1b
Histone-1zbbG02
G:17-90
1c
Histone-1zbbG03
G:17-90
1d
Histone-1zbbG04
G:17-90
1e
Histone-1zbbh01
h:28-98
1f
Histone-1zbbh02
h:28-98
1g
Histone-1zbbh03
h:28-98
1h
Histone-1zbbh04
h:28-98
1i
Histone-1zbbE01
E:57-131
1j
Histone-1zbbE02
E:57-131
1k
Histone-1zbbE03
E:57-131
1l
Histone-1zbbE04
E:57-131
1m
Histone-1zbbF01
F:24-93
1n
Histone-1zbbF02
F:24-93
1o
Histone-1zbbF03
F:24-93
1p
Histone-1zbbF04
F:24-93
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Asym.Unit (464 KB)
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