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1ZBA
Asym. Unit
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Asym.Unit (127 KB)
Biol.Unit 1, α-C (6.7 MB)
Biol.Unit 1 (6.7 MB)
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(1)
Title
:
FOOT-AND-MOUTH DISEASE VIRUS SEROTYPE A1061 COMPLEXED WITH OLIGOSACCHARIDE RECEPTOR.
Authors
:
E. E. Fry, J. W. Newman, S. Curry, S. Najjam, T. Jackson, W. Blakemore, S. L. Miller, A. Burman, A. M. King, D. I. Stuart
Date
:
08 Apr 05 (Deposition) - 28 Jun 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : 1,2,3,4
Biol. Unit 1: 1,2,3,4 (60x)
Keywords
:
Oligosaccharide Receptor, Virus/Viral Protein, Icosahedral Virus, Virus
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Reference
:
E. E. Fry, J. W. Newman, S. Curry, S. Najjam, T. Jackson, W. Blakemore, S. M. Lea, L. Miller, A. Burman, A. M. King, D. I. Stuart
Structure Of Foot-And-Mouth Disease Virus Serotype A1061 Alone And Complexed With Oligosaccharide Receptor: Receptor Conservation In The Face Of Antigenic Variation.
J. Gen. Virol. V. 86 1909 2005
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: 2-O-SULFO-ALPHA-L-IDOPYRANURONIC A... (IDSa)
2a: N,O6-DISULFO-GLUCOSAMINE (SGNa)
2b: N,O6-DISULFO-GLUCOSAMINE (SGNb)
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No.
Name
Count
Type
Full Name
1
IDS
1
Ligand/Ion
2-O-SULFO-ALPHA-L-IDOPYRANURONIC ACID
2
SGN
2
Ligand/Ion
N,O6-DISULFO-GLUCOSAMINE
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
IDS 1:502
BINDING SITE FOR RESIDUE SGN 1 501
2
AC2
SOFTWARE
LYS 1:193 , SGN 1:501 , SGN 1:503 , HOH 1:506 , THR 2:134
BINDING SITE FOR RESIDUE IDS 1 502
3
AC3
SOFTWARE
LYS 1:193 , IDS 1:502 , HOH 1:505 , HOH 1:507 , THR 2:134 , ARG 2:135
BINDING SITE FOR RESIDUE SGN 1 503
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1zba1_ (1:)
1b: SCOP_d1zba3_ (3:)
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Protein Domains
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Class
:
All beta proteins
(24004)
Fold
:
Nucleoplasmin-like/VP (viral coat and capsid proteins)
(278)
Superfamily
:
Positive stranded ssRNA viruses
(163)
Family
:
Picornaviridae-like VP (VP1, VP2, VP3 and VP4)
(103)
Protein domain
:
automated matches
(18)
Foot-and-mouth disease virus [TaxId: 12110]
(2)
1a
d1zba1_
1:
1b
d1zba3_
3:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1zba400 (4:15-85)
2a: CATH_1zba300 (3:1-221)
2b: CATH_1zba200 (2:12-218)
2c: CATH_1zba100 (1:1-208)
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Organisms
(
)
(
)
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Foot-And-Mouth Disease Virus, subunit 4
(9)
Homologous Superfamily
:
Foot-And-Mouth Disease Virus, subunit 4
(9)
Foot-and-mouth disease virus. Organism_taxid: 12110. Foot-and-mouth disease virus. Organism_taxid: 12110. Foot-and-mouth disease virus. Organism_taxid: 12110.
(2)
1a
1zba400
4:15-85
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.20, no name defined]
(133)
Foot-and-mouth disease virus. Organism_taxid: 12110. Foot-and-mouth disease virus. Organism_taxid: 12110. Foot-and-mouth disease virus. Organism_taxid: 12110.
(2)
2a
1zba300
3:1-221
2b
1zba200
2:12-218
2c
1zba100
1:1-208
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Rhv_1zba301 (3:21-190)
1b: PFAM_Rhv_1zba302 (3:21-190)
1c: PFAM_Rhv_1zba303 (3:21-190)
2a: PFAM_VP4_2_1zba401 (4:15-85)
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Organisms
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Clan
:
Viral_ssRNA_CP
(106)
Family
:
Rhv
(55)
Foot-and-mouth disease virus (strain A10-61) (Aphthovirus A) (FMDV)
(2)
1a
Rhv-1zba301
3:21-190
1b
Rhv-1zba302
3:21-190
1c
Rhv-1zba303
3:21-190
Clan
:
no clan defined [family: VP4_2]
(10)
Family
:
VP4_2
(10)
Foot-and-mouth disease virus (strain A10-61) (Aphthovirus A) (FMDV)
(2)
2a
VP4_2-1zba401
4:15-85
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Asymmetric Unit 1
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Asym.Unit (127 KB)
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