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1ZA3
Biol. Unit 1
Info
Asym.Unit (175 KB)
Biol.Unit 1 (86 KB)
Biol.Unit 2 (83 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF THE YSD1 FAB BOUND TO DR5
Authors
:
F. A. Fellouse, B. Li, D. M. Compaan, A. A. Peden, S. G. Hymowitz, S. S. Sid
Date
:
05 Apr 05 (Deposition) - 14 Jun 05 (Release) - 05 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.35
Chains
:
Asym. Unit : A,B,H,L,R,S
Biol. Unit 1: A,B,S (1x)
Biol. Unit 2: H,L,R (1x)
Keywords
:
Phage Display, Protein Engineering, Combinatorial Mutagenesis, Antibody Library, Death Receptor-5, Immune System-Signaling Protein Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. A. Fellouse, B. Li, D. M. Compaan, A. A. Peden, S. G. Hymowitz, S. S. Sidhu
Molecular Recognition By A Binary Code.
J. Mol. Biol. V. 348 1153 2005
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Hetero Components
(0, 0)
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Sorry, no Info available
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: TNFR_NGFR_2 (S:85-125)
2: TNFR_NGFR_1 (S:84-125)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TNFR_NGFR_2
PS50050
TNFR/NGFR family cysteine-rich region domain profile.
TR10B_HUMAN
96-137
138-178
2
-
S:43-84
-
S:85-125
2
TNFR_NGFR_1
PS00652
TNFR/NGFR family cysteine-rich region signature.
TR10B_HUMAN
97-137
137-178
2
-
S:44-84
-
S:84-125
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(5, 14)
Info
All SCOP Domains
1a: SCOP_d1za3b2 (B:114-214)
1b: SCOP_d1za3h2 (H:114-214)
2a: SCOP_d1za3a2 (A:107-213)
2b: SCOP_d1za3l2 (L:107-213)
3a: SCOP_d1za3b1 (B:1-113)
3b: SCOP_d1za3h1 (H:1-113)
4a: SCOP_d1za3a1 (A:1-106)
4b: SCOP_d1za3l1 (L:1-106)
5a: SCOP_d1za3r1 (R:21-61)
5b: SCOP_d1za3r2 (R:62-101)
5c: SCOP_d1za3r3 (R:102-123)
5d: SCOP_d1za3s1 (S:21-61)
5e: SCOP_d1za3s2 (S:62-101)
5f: SCOP_d1za3s3 (S:102-123)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
(608)
Human (Homo sapiens) [TaxId: 9606]
(179)
1a
d1za3b2
B:114-214
1b
d1za3h2
H:114-214
Protein domain
:
Immunoglobulin light chain kappa constant domain, CL-kappa
(495)
Human (Homo sapiens) [TaxId: 9606]
(144)
2a
d1za3a2
A:107-213
2b
d1za3l2
L:107-213
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Camelid IG heavy chain variable domain, VHh
(28)
Human (Homo sapiens) [TaxId: 9606]
(2)
3a
d1za3b1
B:1-113
3b
d1za3h1
H:1-113
Protein domain
:
Immunoglobulin light chain kappa variable domain, VL-kappa
(616)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(9)
4a
d1za3a1
A:1-106
4b
d1za3l1
L:1-106
Class
:
Small proteins
(3458)
Fold
:
TNF receptor-like
(25)
Superfamily
:
TNF receptor-like
(25)
Family
:
TNF receptor-like
(16)
Protein domain
:
Death receptor-5 (dr5) fragment
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
5a
d1za3r1
R:21-61
5b
d1za3r2
R:62-101
5c
d1za3r3
R:102-123
5d
d1za3s1
S:21-61
5e
d1za3s2
S:62-101
5f
d1za3s3
S:102-123
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CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_1za3R02 (R:62-101)
1b: CATH_1za3S02 (S:62-101)
1c: CATH_1za3R01 (R:21-61)
1d: CATH_1za3S01 (S:21-61)
2a: CATH_1za3A02 (A:108-213)
2b: CATH_1za3B02 (B:114-214)
2c: CATH_1za3H02 (H:114-214)
2d: CATH_1za3B01 (B:1-113)
2e: CATH_1za3H01 (H:1-113)
2f: CATH_1za3L02 (L:108-213)
2g: CATH_1za3A01 (A:1-107)
2h: CATH_1za3L01 (L:1-107)
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Homologous Superfamilies
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)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Tumor Necrosis Factor Receptor, subunit A; domain 2
(17)
Homologous Superfamily
:
Tumor Necrosis Factor Receptor, subunit A, domain 2
(16)
[unclassified]
(1)
1a
1za3R02
R:62-101
1b
1za3S02
S:62-101
1c
1za3R01
R:21-61
1d
1za3S01
S:21-61
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
[unclassified]
(54)
2a
1za3A02
A:108-213
2b
1za3B02
B:114-214
2c
1za3H02
H:114-214
2d
1za3B01
B:1-113
2e
1za3H01
H:1-113
2f
1za3L02
L:108-213
2g
1za3A01
A:1-107
2h
1za3L01
L:1-107
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_TNFR_c6_1za3S01 (S:44-84)
1b: PFAM_TNFR_c6_1za3S02 (S:44-84)
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Clan
:
no clan defined [family: TNFR_c6]
(13)
Family
:
TNFR_c6
(13)
Homo sapiens (Human)
(8)
1a
TNFR_c6-1za3S01
S:44-84
1b
TNFR_c6-1za3S02
S:44-84
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Show PDB file:
Asym.Unit (175 KB)
Header - Asym.Unit
Biol.Unit 1 (86 KB)
Header - Biol.Unit 1
Biol.Unit 2 (83 KB)
Header - Biol.Unit 2
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