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1Z9T
Asym. Unit
Info
Asym.Unit (51 KB)
Biol.Unit 1 (44 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A PUTATIVE LACCASE (YFIH) FROM ESCHERICHIA COLI AT 1.54 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
04 Apr 05 (Deposition) - 12 Apr 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.54
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Putative Laccase, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Hypothetical Upf0124 Protein Yfih (Np_417084. 1) From Escherichia Coli K12 At 1. 54 A Resolutio
To Be Published
[
close entry info
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Hetero Components
(3, 24)
Info
All Hetero Components
1a: CITRIC ACID (CITa)
1b: CITRIC ACID (CITb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
2s: 1,2-ETHANEDIOL (EDOs)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CIT
2
Ligand/Ion
CITRIC ACID
2
EDO
19
Ligand/Ion
1,2-ETHANEDIOL
3
MSE
3
Mod. Amino Acid
SELENOMETHIONINE
[
close Hetero Component info
]
Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:115 , GLU A:163 , VAL A:164 , GLY A:165 , LYS A:189 , ARG A:228 , EDO A:248 , EDO A:264
BINDING SITE FOR RESIDUE CIT A 244
02
AC2
SOFTWARE
HIS A:71 , THR A:104 , ALA A:105 , ASP A:106 , CYS A:107 , HIS A:124 , TYR A:227 , ARG A:235 , HOH A:281 , HOH A:426 , HOH A:470
BINDING SITE FOR RESIDUE CIT A 245
03
AC3
SOFTWARE
LEU A:28 , ASN A:43 , HIS A:46 , VAL A:205 , HOH A:278 , HOH A:348
BINDING SITE FOR RESIDUE EDO A 246
04
AC4
SOFTWARE
ARG A:22 , ILE A:23 , GLY A:24 , ASP A:32 , SER A:33 , GLU A:222 , EDO A:253
BINDING SITE FOR RESIDUE EDO A 247
05
AC5
SOFTWARE
PRO A:10 , PRO A:12 , ARG A:115 , LYS A:189 , CIT A:244
BINDING SITE FOR RESIDUE EDO A 248
06
AC6
SOFTWARE
PRO A:159 , ALA A:181 , ALA A:182 , ILE A:184 , LEU A:191 , GLN A:196
BINDING SITE FOR RESIDUE EDO A 249
07
AC7
SOFTWARE
GLY A:58 , HOH A:459
BINDING SITE FOR RESIDUE EDO A 250
08
AC8
SOFTWARE
LEU A:67 , GLN A:69 , EDO A:257 , HOH A:412
BINDING SITE FOR RESIDUE EDO A 251
09
AC9
SOFTWARE
ASP A:106 , CYS A:107 , LEU A:108 , ALA A:125 , GLY A:126 , TRP A:127 , PHE A:162 , ILE A:194 , HOH A:407
BINDING SITE FOR RESIDUE EDO A 252
10
BC1
SOFTWARE
ASP A:32 , ASN A:221 , EDO A:247 , HOH A:333
BINDING SITE FOR RESIDUE EDO A 253
11
BC2
SOFTWARE
ASP A:193 , TYR A:195 , ARG A:199 , GLY A:213 , EDO A:258 , EDO A:263
BINDING SITE FOR RESIDUE EDO A 254
12
BC3
SOFTWARE
VAL A:139 , PHE A:142 , ASP A:144 , PRO A:146 , HOH A:289 , HOH A:404
BINDING SITE FOR RESIDUE EDO A 255
13
BC4
SOFTWARE
ARG A:128
BINDING SITE FOR RESIDUE EDO A 256
14
BC5
SOFTWARE
ARG A:51 , EDO A:251 , HOH A:279
BINDING SITE FOR RESIDUE EDO A 257
15
BC6
SOFTWARE
PRO A:159 , GLY A:213 , ARG A:215 , EDO A:254
BINDING SITE FOR RESIDUE EDO A 258
16
BC7
SOFTWARE
TYR A:218 , THR A:219 , ASN A:221 , ARG A:229 , HOH A:305 , HOH A:309
BINDING SITE FOR RESIDUE EDO A 259
17
BC8
SOFTWARE
PRO A:44 , ARG A:51 , HOH A:334
BINDING SITE FOR RESIDUE EDO A 260
18
BC9
SOFTWARE
GLU A:48 , LYS A:52 , HOH A:443 , HOH A:454
BINDING SITE FOR RESIDUE EDO A 261
19
CC1
SOFTWARE
PHE A:55 , LEU A:60 , SER A:62 , HOH A:445
BINDING SITE FOR RESIDUE EDO A 262
20
CC2
SOFTWARE
GLY A:212 , GLY A:213 , EDO A:254
BINDING SITE FOR RESIDUE EDO A 263
21
CC3
SOFTWARE
TRP A:127 , PHE A:162 , ARG A:228 , CIT A:244 , HOH A:389 , HOH A:398
BINDING SITE FOR RESIDUE EDO A 264
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1z9ta_ (A:)
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(
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(
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
CNF1/YfiH-like putative cysteine hydrolases
(10)
Superfamily
:
CNF1/YfiH-like putative cysteine hydrolases
(10)
Family
:
YfiH-like
(7)
Protein domain
:
Hypothetical protein yfiH
(4)
Escherichia coli [TaxId: 562]
(1)
1a
d1z9ta_
A:
[
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1z9tA00 (A:2-243)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
4-Layer Sandwich
(459)
Topology
:
CNF1/YfiH-like putative cysteine hydrolases
(7)
Homologous Superfamily
:
CNF1/YfiH-like putative cysteine hydrolases
(7)
Escherichia coli. Organism_taxid: 562.
(1)
1a
1z9tA00
A:2-243
[
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Cu_oxidase_4_1z9tA01 (A:19-242)
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Clans
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(
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Organisms
(
)
(
)
Clan
:
no clan defined [family: Cu-oxidase_4]
(6)
Family
:
Cu-oxidase_4
(6)
Escherichia coli (strain K12)
(1)
1a
Cu-oxidase_4-1z9tA01
A:19-242
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Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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select chains 'A' and 'C'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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