PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1Z9Q
Asym. Unit
Info
Asym.Unit (414 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
Models
(20 )
Title
:
SOLUTION STRUCTURE OF SH3 DOMAIN OF P40PHOX
Authors
:
S. Adachi, K. Ogura, Y. Fujioka, F. Inagaki
Date
:
04 Apr 05 (Deposition) - 21 Mar 06 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Oxidoreductase Activator
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Adachi, K. Ogura, Y. Fujioka, F. Inagaki
Solution Structure Of Sh3 Domain Of P40Phox
To Be Published
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SH3 (A:3-62)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SH3
PS50002
Src homology 3 (SH3) domain profile.
NCF4_HUMAN
170-229
1
A:3-62
[
close PROSITE info
]
Exons
(3, 3)
Info
All Exons
Exon 1.6 (A:1-9)
Exon 1.8 (A:10-42)
Exon 1.9a (A:43-66)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.5/1.6
2: Boundary 1.6/1.8
3: Boundary 1.8/1.9a
4: Boundary 1.9a/1.9e
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000248899
1
ENSE00002158629
chr22:
37257030-37257245
216
NCF4_HUMAN
1-11
11
0
-
-
1.2
ENST00000248899
2
ENSE00001766180
chr22:
37260087-37260171
85
NCF4_HUMAN
11-39
29
0
-
-
1.3
ENST00000248899
3
ENSE00001678302
chr22:
37260961-37261114
154
NCF4_HUMAN
40-91
52
0
-
-
1.4
ENST00000248899
4
ENSE00001775431
chr22:
37263434-37263504
71
NCF4_HUMAN
91-114
24
0
-
-
1.5
ENST00000248899
5
ENSE00000880088
chr22:
37266457-37266584
128
NCF4_HUMAN
115-157
43
0
-
-
1.6
ENST00000248899
6
ENSE00000880089
chr22:
37267694-37267751
58
NCF4_HUMAN
157-176
20
1
A:1-9
9
1.8
ENST00000248899
8
ENSE00000653691
chr22:
37268369-37268467
99
NCF4_HUMAN
177-209
33
1
A:10-42
33
1.9a
ENST00000248899
9a
ENSE00001270603
chr22:
37271695-37271825
131
NCF4_HUMAN
210-253
44
1
A:43-66
24
1.9e
ENST00000248899
9e
ENSE00000653693
chr22:
37272071-37272136
66
NCF4_HUMAN
253-275
23
0
-
-
1.10b
ENST00000248899
10b
ENSE00001850230
chr22:
37273670-37274057
388
NCF4_HUMAN
275-339
65
0
-
-
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1z9qa_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
SH3-like barrel
(1035)
Superfamily
:
SH3-domain
(369)
Family
:
automated matches
(114)
Protein domain
:
automated matches
(114)
Human (Homo sapiens) [TaxId: 9606]
(74)
1a
d1z9qa_
A:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_SH3_1_1z9qA01 (A:9-54)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
SH3
(175)
Family
:
SH3_1
(141)
Homo sapiens (Human)
(69)
1a
SH3_1-1z9qA01
A:9-54
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (414 KB)
Header - Asym.Unit
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1Z9Q
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help