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1Z9J
Asym. Unit
Info
Asym.Unit (131 KB)
Biol.Unit 1 (121 KB)
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(1)
Title
:
PHOTOSYNTHETIC REACTION CENTER FROM RHODOBACTER SPHAEROIDES
Authors
:
M. Thielges, G. Uyeda, A. Camara-Artigas, L. Kalman, J. C. Williams, J.
Date
:
02 Apr 05 (Deposition) - 07 Jun 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
4.50
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Alpha Helix, Membrane Protein, Mutant, Photosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Thielges, G. Uyeda, A. Camara-Artigas, L. Kalman, J. C. Williams, J. P. Allen
Design Of A Redox-Linked Active Metal Site: Manganese Bound To Bacterial Reaction Centers At A Site Resembling That Of Photosystem Ii
Biochemistry V. 44 7389 2005
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Hetero Components
(5, 10)
Info
All Hetero Components
1a: BACTERIOCHLOROPHYLL A (BCLa)
1b: BACTERIOCHLOROPHYLL A (BCLb)
1c: BACTERIOCHLOROPHYLL A (BCLc)
1d: BACTERIOCHLOROPHYLL A (BCLd)
2a: BACTERIOPHEOPHYTIN A (BPHa)
2b: BACTERIOPHEOPHYTIN A (BPHb)
3a: FE (III) ION (FEa)
4a: MANGANESE (II) ION (MNa)
5a: UBIQUINONE-10 (U10a)
5b: UBIQUINONE-10 (U10b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BCL
4
Ligand/Ion
BACTERIOCHLOROPHYLL A
2
BPH
2
Ligand/Ion
BACTERIOPHEOPHYTIN A
3
FE
1
Ligand/Ion
FE (III) ION
4
MN
1
Ligand/Ion
MANGANESE (II) ION
5
U10
2
Ligand/Ion
UBIQUINONE-10
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:190 , HIS A:230 , HIS B:219 , GLU B:234 , HIS B:266
BINDING SITE FOR RESIDUE FE B 858
02
AC2
SOFTWARE
GLU B:168 , GLU B:173 , VAL B:192 , HIS B:193 , ASP B:288
BINDING SITE FOR RESIDUE MN B 900
03
AC3
SOFTWARE
MET A:174 , ILE A:177 , SER A:178 , THR A:182 , LEU A:185 , BCL A:851 , U10 A:857 , PHE B:67 , ILE B:70 , HIS B:160 , HIS B:182 , THR B:186 , BCL B:852 , BPH B:854
BINDING SITE FOR RESIDUE BCL A 850
04
AC4
SOFTWARE
PHE A:97 , ALA A:124 , ALA A:127 , TYR A:128 , HIS A:131 , TYR A:162 , PHE A:167 , HIS A:168 , HIS A:173 , PHE A:180 , VAL A:241 , SER A:244 , ALA A:245 , MET A:248 , BCL A:850 , BPH A:855 , TYR B:210 , BCL B:852 , BCL B:853
BINDING SITE FOR RESIDUE BCL A 851
05
AC5
SOFTWARE
TYR A:162 , PHE A:181 , BCL A:850 , BCL A:851 , MET B:122 , ALA B:153 , LEU B:156 , HIS B:160 , THR B:186 , LEU B:196 , HIS B:197 , HIS B:202 , SER B:205 , ILE B:206 , TYR B:210 , VAL B:276 , GLY B:280 , ILE B:284 , BCL B:853 , BPH B:854
BINDING SITE FOR RESIDUE BCL B 852
06
AC6
SOFTWARE
ILE A:46 , TYR A:128 , HIS A:131 , PHE A:146 , HIS A:153 , LEU A:154 , BCL A:851 , BPH A:855 , GLY B:203 , ILE B:206 , ALA B:207 , TYR B:210 , BCL B:852
BINDING SITE FOR RESIDUE BCL B 853
07
AC7
SOFTWARE
PHE A:181 , ALA A:184 , LEU A:185 , BCL A:850 , LEU B:60 , GLY B:63 , LEU B:64 , ALA B:125 , VAL B:126 , TRP B:129 , ALA B:149 , PHE B:150 , ALA B:273 , THR B:277 , BCL B:852
BINDING SITE FOR RESIDUE BPH B 854
08
AC8
SOFTWARE
ALA A:42 , GLY A:45 , ALA A:96 , PHE A:97 , TRP A:100 , GLU A:104 , ALA A:120 , PHE A:121 , TYR A:148 , GLY A:149 , SER A:237 , VAL A:241 , BCL A:851 , TYR B:210 , ALA B:213 , LEU B:214 , MET B:218 , TRP B:252 , BCL B:853 , U10 B:856
BINDING SITE FOR RESIDUE BPH A 855
09
AC9
SOFTWARE
GLY A:35 , THR A:38 , PHE A:39 , TRP A:100 , BPH A:855 , MET B:218 , HIS B:219 , THR B:222 , ALA B:248 , ALA B:249 , TRP B:252 , MET B:256 , ASN B:259 , ALA B:260 , THR B:261 , MET B:262 , ILE B:265 , TRP B:268
BINDING SITE FOR RESIDUE U10 B 856
10
BC1
SOFTWARE
LEU A:189 , HIS A:190 , LEU A:193 , PHE A:216 , TYR A:222 , SER A:223 , ILE A:224 , ILE A:229 , LEU A:232 , BCL A:850
BINDING SITE FOR RESIDUE U10 A 857
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: REACTION_CENTER (A:166-192,A:166-192,B:195-221,B:19...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
REACTION_CENTER
PS00244
Photosynthetic reaction center proteins signature.
RCEL_RHOS4
167-193
1
A:166-192
RCEL_RHOSH
167-193
1
A:166-192
RCEM_RHOS4
196-222
1
B:195-221
RCEM_RHOSH
196-222
1
B:195-221
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(3, 4)
Info
all PFAM domains
1a: PFAM_PRC_1z9jC01 (C:141-212)
2a: PFAM_PRCH_1z9jC02 (C:11-137)
3a: PFAM_Photo_RC_1z9jA01 (A:29-272)
3b: PFAM_Photo_RC_1z9jB01 (B:50-302)
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Clans
(
)
(
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Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
PRC-barrel
(43)
Family
:
PRC
(42)
Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
(39)
1a
PRC-1z9jC01
C:141-212
Clan
:
no clan defined [family: PRCH]
(40)
Family
:
PRCH
(40)
Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
(39)
2a
PRCH-1z9jC02
C:11-137
Clan
:
no clan defined [family: Photo_RC]
(43)
Family
:
Photo_RC
(43)
Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
(39)
3a
Photo_RC-1z9jA01
A:29-272
3b
Photo_RC-1z9jB01
B:50-302
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Chain C
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (131 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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