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1Z9I
Asym. Unit
Info
Asym.Unit (390 KB)
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Models
(25 )
Title
:
A STRUCTURAL MODEL FOR THE MEMBRANE-BOUND FORM OF THE JUXTAMEMBRANE DOMAIN OF THE EPIDERMAL GROWTH FACTOR RECEPTOR
Authors
:
K. Choowongkomon, C. R. Carlin, F. D. Sonnichsen
Date
:
02 Apr 05 (Deposition) - 24 May 05 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (25 x)
Keywords
:
Juxtamembrane Structure Egfr Micelle, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Choowongkomon, C. R. Carlin
A Structural Model For The Membrane-Bound Form Of The Juxtamembrane Domain Of The Epidermal Growth Factor Receptor
J. Biol. Chem. V. 280 24043 2005
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Label:
Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(8, 8)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_019296 (V6I, chain A, )
2: VAR_026084 (E41A, chain A, )
3: VAR_069498 (E41G, chain A, )
4: VAR_026085 (E41K, chain A, )
5: VAR_026086 (G51A, chain A, )
6: VAR_026087 (G51C, chain A, )
7: VAR_026088 (G51D, chain A, )
8: VAR_019297 (G51S, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_019296
V
674
I
EGFR_HUMAN
Polymorphism
17337079
A
V
6
I
2
UniProt
VAR_026084
E
709
A
EGFR_HUMAN
Unclassified
---
A
E
41
A
3
UniProt
VAR_069498
E
709
G
EGFR_HUMAN
Unclassified
---
A
E
41
G
4
UniProt
VAR_026085
E
709
K
EGFR_HUMAN
Unclassified
---
A
E
41
K
5
UniProt
VAR_026086
G
719
A
EGFR_HUMAN
Unclassified
---
A
G
51
A
6
UniProt
VAR_026087
G
719
C
EGFR_HUMAN
Polymorphism
28929495
A
G
51
C
7
UniProt
VAR_026088
G
719
D
EGFR_HUMAN
Unclassified
---
A
G
51
D
8
UniProt
VAR_019297
G
719
S
EGFR_HUMAN
Unclassified
---
A
G
51
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:50-53)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
EGFR_HUMAN
718-745
1
A:50-53
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Exons
(2, 2)
Info
All Exons
Exon 1.23 (A:1-19)
Exon 1.24 (A:20-53)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.21/1.23
2: Boundary 1.23/1.24
3: Boundary 1.24/1.25
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1e
ENST00000275493
1e
ENSE00001841347
chr7:
55086794-55087058
265
EGFR_HUMAN
1-30
30
0
-
-
1.5
ENST00000275493
5
ENSE00001715021
chr7:
55209979-55210130
152
EGFR_HUMAN
30-80
51
0
-
-
1.6
ENST00000275493
6
ENSE00001704157
chr7:
55210998-55211181
184
EGFR_HUMAN
81-142
62
0
-
-
1.7b
ENST00000275493
7b
ENSE00001798125
chr7:
55214299-55214433
135
EGFR_HUMAN
142-187
46
0
-
-
1.8
ENST00000275493
8
ENSE00001683983
chr7:
55218987-55219055
69
EGFR_HUMAN
187-210
24
0
-
-
1.9
ENST00000275493
9
ENSE00001652975
chr7:
55220239-55220357
119
EGFR_HUMAN
210-249
40
0
-
-
1.10
ENST00000275493
10
ENSE00001623732
chr7:
55221704-55221845
142
EGFR_HUMAN
250-297
48
0
-
-
1.11
ENST00000275493
11
ENSE00001751179
chr7:
55223523-55223639
117
EGFR_HUMAN
297-336
40
0
-
-
1.12
ENST00000275493
12
ENSE00001084929
chr7:
55224226-55224352
127
EGFR_HUMAN
336-378
43
0
-
-
1.13a
ENST00000275493
13a
ENSE00001084931
chr7:
55224452-55224525
74
EGFR_HUMAN
378-403
26
0
-
-
1.14
ENST00000275493
14
ENSE00001084926
chr7:
55225356-55225446
91
EGFR_HUMAN
403-433
31
0
-
-
1.15
ENST00000275493
15
ENSE00001084941
chr7:
55227832-55228031
200
EGFR_HUMAN
433-500
68
0
-
-
1.16
ENST00000275493
16
ENSE00001084939
chr7:
55229192-55229324
133
EGFR_HUMAN
500-544
45
0
-
-
1.17
ENST00000275493
17
ENSE00001084927
chr7:
55231426-55231516
91
EGFR_HUMAN
544-574
31
0
-
-
1.18
ENST00000275493
18
ENSE00001627115
chr7:
55232973-55233130
158
EGFR_HUMAN
575-627
53
0
-
-
1.21
ENST00000275493
21
ENSE00001768076
chr7:
55238868-55238906
39
EGFR_HUMAN
627-640
14
0
-
-
1.23
ENST00000275493
23
ENSE00001699330
chr7:
55240676-55240817
142
EGFR_HUMAN
640-687
48
1
A:1-19
19
1.24
ENST00000275493
24
ENSE00001778519
chr7:
55241614-55241736
123
EGFR_HUMAN
688-728
41
1
A:20-53
34
1.25
ENST00000275493
25
ENSE00001756460
chr7:
55242415-55242513
99
EGFR_HUMAN
729-761
33
0
-
-
1.26
ENST00000275493
26
ENSE00001601336
chr7:
55248986-55249171
186
EGFR_HUMAN
762-823
62
0
-
-
1.27
ENST00000275493
27
ENSE00001681524
chr7:
55259412-55259567
156
EGFR_HUMAN
824-875
52
0
-
-
1.28a
ENST00000275493
28a
ENSE00001631695
chr7:
55260459-55260534
76
EGFR_HUMAN
876-901
26
0
-
-
1.29
ENST00000275493
29
ENSE00001779947
chr7:
55266410-55266556
147
EGFR_HUMAN
901-950
50
0
-
-
1.30a
ENST00000275493
30a
ENSE00001790701
chr7:
55268009-55268106
98
EGFR_HUMAN
950-982
33
0
-
-
1.31
ENST00000275493
31
ENSE00001801208
chr7:
55268881-55269048
168
EGFR_HUMAN
983-1038
56
0
-
-
1.32
ENST00000275493
32
ENSE00001773562
chr7:
55269428-55269475
48
EGFR_HUMAN
1039-1054
16
0
-
-
1.33a
ENST00000275493
33a
ENSE00001795780
chr7:
55270210-55270318
109
EGFR_HUMAN
1055-1091
37
0
-
-
1.34b
ENST00000275493
34b
ENSE00001245887
chr7:
55272949-55279321
6373
EGFR_HUMAN
1091-1210
120
0
-
-
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SCOP Domains
(0, 0)
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1z9iA01 (A:9-53)
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Topologies
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
membrane-bound form of the juxtamembrane domain of the epidermal growth factor receptor like fold
(1)
Homologous Superfamily
:
membrane-bound form of the juxtamembrane domain of the epidermal growth factor receptor like domain
(1)
Human (Homo sapiens)
(1)
1a
1z9iA01
A:9-53
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Pkinase_Tyr_1z9iA01 (A:44-53)
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Clans
(
)
(
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Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
PKinase
(934)
Family
:
Pkinase_Tyr
(229)
Homo sapiens (Human)
(202)
1a
Pkinase_Tyr-1z9iA01
A:44-53
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Chain A
Asymmetric Unit 1
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