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1Z8Y
Asym. Unit
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Asym.Unit (371 KB)
Biol.Unit 1, α-C (20.9 MB)
Biol.Unit 1 (20.9 MB)
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(1)
Title
:
MAPPING THE E2 GLYCOPROTEIN OF ALPHAVIRUSES
Authors
:
S. Mukhopadhyay, W. Zhang, S. Gabler, P. R. Chipman, E. G. Strauss, J. H. Strauss, T. S. Baker, R. J. Kuhn, M. G. Rossmann
Date
:
31 Mar 05 (Deposition) - 07 Feb 06 (Release) - 24 Feb 09 (Revision)
Method
:
ELECTRON MICROSCOPY
Resolution
:
9.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T (60x)
Keywords
:
Icosahedral Enveloped Virus, Cryo-Electron Microscopy, Icosahedral Virus
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Mukhopadhyay, W. Zhang, S. Gabler, P. R. Chipman, E. G. Strauss, J. H. Strauss, T. S. Baker, R. J. Kuhn, M. G. Rossmann
Mapping The Structure And Function Of The E1 And E2 Glycoproteins In Alphaviruses.
Structure V. 14 63 2006
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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Sorry, no Info available
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SAPs(SNPs)/Variants
(2, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_POLS_SINDV_006 (L29L, chain J/L/N/P, )
2: VAR_POLS_SINDV_007 (D113V, chain A/C/E/G, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_POLS_SINDV_006
*
K
719
L
POLS_SINDV
---
---
J/L/N/P
L
29
L
2
UniProt
VAR_POLS_SINDV_007
*
D
919
V
POLS_SINDV
---
---
A/C/E/G
D
113
V
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: ALPHAVIRUS_CP (Q:114-264,R:114-264,S:114-264,T:11...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALPHAVIRUS_CP
PS51690
Alphavirus core protein (CP) domain profile.
POLS_SINDV
114-264
4
Q:114-264
R:114-264
S:114-264
T:114-264
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1z8yq1 (Q:114-264)
1b: SCOP_d1z8yr1 (R:114-264)
1c: SCOP_d1z8ys1 (S:114-264)
1d: SCOP_d1z8yt1 (T:114-264)
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Class
:
All beta proteins
(24004)
Fold
:
Trypsin-like serine proteases
(1752)
Superfamily
:
Trypsin-like serine proteases
(1752)
Family
:
Viral proteases
(62)
Protein domain
:
Viral capsid protein
(15)
Sindbis virus [TaxId: 11034]
(11)
1a
d1z8yq1
Q:114-264
1b
d1z8yr1
R:114-264
1c
d1z8ys1
S:114-264
1d
d1z8yt1
T:114-264
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CATH Domains
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Pfam Domains
(3, 20)
Info
all PFAM domains
1a: PFAM_Peptidase_S3_1z8yT01 (T:114-264)
1b: PFAM_Peptidase_S3_1z8yT02 (T:114-264)
1c: PFAM_Peptidase_S3_1z8yT03 (T:114-264)
1d: PFAM_Peptidase_S3_1z8yT04 (T:114-264)
2a: PFAM_Alpha_E1_glycop_1z8yO01 (O:1-30)
2b: PFAM_Alpha_E1_glycop_1z8yO02 (O:1-30)
2c: PFAM_Alpha_E1_glycop_1z8yO03 (O:1-30)
2d: PFAM_Alpha_E1_glycop_1z8yO04 (O:1-30)
2e: PFAM_Alpha_E1_glycop_1z8yO05 (O:1-30)
2f: PFAM_Alpha_E1_glycop_1z8yO06 (O:1-30)
2g: PFAM_Alpha_E1_glycop_1z8yO07 (O:1-30)
2h: PFAM_Alpha_E1_glycop_1z8yO08 (O:1-30)
2i: PFAM_Alpha_E1_glycop_1z8yO09 (O:1-30)
2j: PFAM_Alpha_E1_glycop_1z8yO10 (O:1-30)
2k: PFAM_Alpha_E1_glycop_1z8yO11 (O:1-30)
2l: PFAM_Alpha_E1_glycop_1z8yO12 (O:1-30)
3a: PFAM_Alpha_E2_glycop_1z8yP01 (P:1-36)
3b: PFAM_Alpha_E2_glycop_1z8yP02 (P:1-36)
3c: PFAM_Alpha_E2_glycop_1z8yP03 (P:1-36)
3d: PFAM_Alpha_E2_glycop_1z8yP04 (P:1-36)
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Clan
:
Peptidase_PA
(797)
Family
:
Peptidase_S3
(13)
Sindbis virus (SINV)
(10)
1a
Peptidase_S3-1z8yT01
T:114-264
1b
Peptidase_S3-1z8yT02
T:114-264
1c
Peptidase_S3-1z8yT03
T:114-264
1d
Peptidase_S3-1z8yT04
T:114-264
Clan
:
no clan defined [family: Alpha_E1_glycop]
(11)
Family
:
Alpha_E1_glycop
(11)
Sindbis virus (SINV)
(3)
2a
Alpha_E1_glycop-1z8yO01
O:1-30
2b
Alpha_E1_glycop-1z8yO02
O:1-30
2c
Alpha_E1_glycop-1z8yO03
O:1-30
2d
Alpha_E1_glycop-1z8yO04
O:1-30
2e
Alpha_E1_glycop-1z8yO05
O:1-30
2f
Alpha_E1_glycop-1z8yO06
O:1-30
2g
Alpha_E1_glycop-1z8yO07
O:1-30
2h
Alpha_E1_glycop-1z8yO08
O:1-30
2i
Alpha_E1_glycop-1z8yO09
O:1-30
2j
Alpha_E1_glycop-1z8yO10
O:1-30
2k
Alpha_E1_glycop-1z8yO11
O:1-30
2l
Alpha_E1_glycop-1z8yO12
O:1-30
Clan
:
no clan defined [family: Alpha_E2_glycop]
(9)
Family
:
Alpha_E2_glycop
(9)
Sindbis virus (SINV)
(2)
3a
Alpha_E2_glycop-1z8yP01
P:1-36
3b
Alpha_E2_glycop-1z8yP02
P:1-36
3c
Alpha_E2_glycop-1z8yP03
P:1-36
3d
Alpha_E2_glycop-1z8yP04
P:1-36
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Asym.Unit (371 KB)
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