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1Z8G
Asym. Unit
Info
Asym.Unit (71 KB)
Biol.Unit 1 (67 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE EXTRACELLULAR REGION OF THE TRANSMEMBRANE SERINE PROTEASE HEPSIN WITH COVALENTLY BOUND PREFERRED SUBSTRATE.
Authors
:
S. Herter, D. E. Piper, W. Aaron, T. Gabriele, G. Cutler, P. Cao, A. S. Bha Y. Choe, C. S. Craik, N. Walker, D. Meininger, T. Hoey, R. J. Austin
Date
:
30 Mar 05 (Deposition) - 03 May 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.55
Chains
:
Asym. Unit : A,L
Biol. Unit 1: A,L (1x)
Keywords
:
Serine Protease Hepsin, Protease, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Herter, D. E. Piper, W. Aaron, T. Gabriele, G. Cutler, P. Cao, A. S. Bhatt, Y. Choe, C. S. Craik, N. Walker, D. Meininger, T. Hoey, R. J. Austin
Hepatocyte Growth Factor Is A Preferred In Vitro Substrate For Human Hepsin, A Membrane-Anchored Serine Protease Implicated In Prostate And Ovarian Cancers
Biochem. J. V. 390 125 2005
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: CHLOROMETHANE (0QEa)
2a: ACETYL GROUP (ACEa)
3a: AMINO{[(4S)-4-AMINO-5,5-DIHYDROXYP... (AR7a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
0QE
1
Mod. Amino Acid
CHLOROMETHANE
2
ACE
1
Mod. Amino Acid
ACETYL GROUP
3
AR7
1
Mod. Amino Acid
AMINO{[(4S)-4-AMINO-5,5-DIHYDROXYPENTYL]AMINO}METHANIMINIUM
[
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:203 , TYR A:243 , GLU A:252 , ASN A:254 , TYR A:301 , GLN A:331 , ASP A:347 , ALA A:348 , CYS A:349 , GLN A:350 , GLY A:351 , SER A:353 , SER A:376 , TRP A:377 , GLY A:378 , THR A:379 , GLY A:380 , CYS A:381 , GLY A:388 , HOH A:476 , HOH A:524 , HOH L:188 , HOH L:267 , HOH L:268 , HOH L:302 , HOH L:409
BINDING SITE FOR CHAIN L OF ACE-LYS-GLN-LEU-ARG- CHLOROMETHYLKETONE
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: TRYPSIN_DOM (A:163-405)
2: TRYPSIN_HIS (A:199-204)
3: TRYPSIN_SER (A:347-358)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TRYPSIN_DOM
PS50240
Serine proteases, trypsin domain profile.
HEPS_HUMAN
163-405
1
A:163-405
2
TRYPSIN_HIS
PS00134
Serine proteases, trypsin family, histidine active site.
HEPS_HUMAN
199-204
1
A:199-204
3
TRYPSIN_SER
PS00135
Serine proteases, trypsin family, serine active site.
HEPS_HUMAN
347-358
1
A:347-358
[
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Exons
(10, 10)
Info
All Exons
Exon 1.4 (A:49-54)
Exon 1.5 (A:54-97)
Exon 1.6 (A:97-138)
Exon 1.7 (A:138-152)
Exon 1.8 (A:152-207 (gaps))
Exon 1.9 (A:207-271)
Exon 1.10 (A:271-303)
Exon 1.11 (A:303-350)
Exon 1.12 (A:351-405)
Exon 1.13 (A:406-417)
View:
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All Exon Boundaries
01: Boundary 1.3/1.4
02: Boundary 1.4/1.5
03: Boundary 1.5/1.6
04: Boundary 1.6/1.7
05: Boundary 1.7/1.8
06: Boundary 1.8/1.9
07: Boundary 1.9/1.10
08: Boundary 1.10/1.11
09: Boundary 1.11/1.12
10: Boundary 1.12/1.13
11: Boundary 1.13/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000392226
1
ENSE00001114495
chr19:
35531410-35531449
40
HEPS_HUMAN
-
0
0
-
-
1.2a
ENST00000392226
2a
ENSE00001638672
chr19:
35532626-35532776
151
HEPS_HUMAN
-
0
0
-
-
1.2c
ENST00000392226
2c
ENSE00001669183
chr19:
35533357-35533426
70
HEPS_HUMAN
1-6
6
0
-
-
1.3
ENST00000392226
3
ENSE00000953257
chr19:
35540194-35540295
102
HEPS_HUMAN
6-40
35
0
-
-
1.4
ENST00000392226
4
ENSE00001253027
chr19:
35540379-35540420
42
HEPS_HUMAN
40-54
15
1
A:49-54
6
1.5
ENST00000392226
5
ENSE00001253082
chr19:
35550577-35550706
130
HEPS_HUMAN
54-97
44
1
A:54-97
44
1.6
ENST00000392226
6
ENSE00000953258
chr19:
35550778-35550900
123
HEPS_HUMAN
97-138
42
1
A:97-138
42
1.7
ENST00000392226
7
ENSE00000862744
chr19:
35551033-35551073
41
HEPS_HUMAN
138-152
15
1
A:138-152
15
1.8
ENST00000392226
8
ENSE00000700403
chr19:
35551251-35551416
166
HEPS_HUMAN
152-207
56
1
A:152-207 (gaps)
56
1.9
ENST00000392226
9
ENSE00000953259
chr19:
35551531-35551721
191
HEPS_HUMAN
207-271
65
1
A:207-271
65
1.10
ENST00000392226
10
ENSE00000700401
chr19:
35556154-35556249
96
HEPS_HUMAN
271-303
33
1
A:271-303
33
1.11
ENST00000392226
11
ENSE00000700399
chr19:
35556443-35556585
143
HEPS_HUMAN
303-350
48
1
A:303-350
48
1.12
ENST00000392226
12
ENSE00001253074
chr19:
35556772-35556936
165
HEPS_HUMAN
351-405
55
1
A:351-405
55
1.13
ENST00000392226
13
ENSE00001114496
chr19:
35557153-35557475
323
HEPS_HUMAN
406-417
12
1
A:406-417
12
[
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1z8ga1 (A:163-417)
2a: SCOP_d1z8ga2 (A:50-159)
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Protein Domains
(
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(
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Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Trypsin-like serine proteases
(1752)
Superfamily
:
Trypsin-like serine proteases
(1752)
Family
:
Eukaryotic proteases
(1343)
Protein domain
:
Hepsin, catalytic domain
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d1z8ga1
A:163-417
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
SRCR-like
(6)
Superfamily
:
SRCR-like
(5)
Family
:
Hepsin, N-terminal domain
(4)
Protein domain
:
Hepsin, N-terminal domain
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
2a
d1z8ga2
A:50-159
[
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CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_1z8gA01 (A:49-152)
2a: CATH_1z8gA02 (A:163-174,A:276-392)
2b: CATH_1z8gA03 (A:175-275,A:393-417)
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(
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Mac-2 Binding Protein
(7)
Homologous Superfamily
:
Mac-2 Binding Protein;
(7)
Human (Homo sapiens)
(5)
1a
1z8gA01
A:49-152
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Thrombin, subunit H
(1535)
Homologous Superfamily
:
Trypsin-like serine proteases
(1488)
Human (Homo sapiens)
(615)
2a
1z8gA02
A:163-174,A:276-392
2b
1z8gA03
A:175-275,A:393-417
[
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Trypsin_1z8gA01 (A:163-400)
2a: PFAM_Hepsin_SRCR_1z8gA02 (A:50-159)
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Clans
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(
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Organisms
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(
)
Clan
:
Peptidase_PA
(797)
Family
:
Trypsin
(679)
Homo sapiens (Human)
(339)
1a
Trypsin-1z8gA01
A:163-400
Clan
:
no clan defined [family: Hepsin-SRCR]
(4)
Family
:
Hepsin-SRCR
(4)
Homo sapiens (Human)
(4)
2a
Hepsin-SRCR-1z8gA02
A:50-159
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Asymmetric Unit 1
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