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1Z88
Asym. Unit
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Asym.Unit (149 KB)
Biol.Unit 1 (145 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF LYS154ARG MUTANT OF MATURE APHA OF S. TYPHIMURIUM
Authors
:
R. D. Makde, G. D. Gupta, V. Kumar
Date
:
30 Mar 05 (Deposition) - 04 Apr 06 (Release) - 02 Sep 08 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Class-B Bacterial Acid Phosphatase, Lys154Arg Mutant Of Mature Apha, Metalloenzyme, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. D. Makde, G. D. Gupta, S. K. Mahajan, V. Kumar
Structural And Mutational Analyses Reveal The Functional Role Of Active-Site Lys-154 And Asp-173 Of Salmonella Typhimurium Apha Protein.
Arch. Biochem. Biophys. V. 464 70 2007
(for further references see the
PDB file header
)
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
1c: MAGNESIUM ION (MGc)
1d: MAGNESIUM ION (MGd)
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No.
Name
Count
Type
Full Name
1
MG
4
Ligand/Ion
MAGNESIUM ION
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Sites
(4, 4)
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:46 , ASP A:48 , ASP A:169 , HOH A:603 , HOH A:604 , HOH A:698
BINDING SITE FOR RESIDUE MG A 601
2
AC2
SOFTWARE
ASP B:46 , ASP B:48 , ASP B:169 , HOH B:609 , HOH B:689 , HOH B:690
BINDING SITE FOR RESIDUE MG B 602
3
AC3
SOFTWARE
ASP D:46 , ASP D:48 , ASP D:169 , HOH D:613 , HOH D:713 , HOH D:714
BINDING SITE FOR RESIDUE MG D 603
4
AC4
SOFTWARE
ASP C:46 , ASP C:48 , ASP C:169 , HOH C:610 , HOH C:611 , HOH C:683
BINDING SITE FOR RESIDUE MG C 604
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1z88a1 (A:7-214)
1b: SCOP_d1z88b_ (B:)
1c: SCOP_d1z88c_ (C:)
1d: SCOP_d1z88d_ (D:)
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
HAD-like
(349)
Superfamily
:
HAD-like
(349)
Family
:
Class B acid phosphatase, AphA
(15)
Protein domain
:
Class B acid phosphatase, AphA
(15)
Salmonella typhimurium [TaxId: 90371]
(4)
1a
d1z88a1
A:7-214
1b
d1z88b_
B:
1c
d1z88c_
C:
1d
d1z88d_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1z88A00 (A:7-214)
1b: CATH_1z88C00 (C:6-214)
1c: CATH_1z88D00 (D:4-214)
1d: CATH_1z88B00 (B:6-214)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1000, no name defined]
(211)
Salmonella typhimurium. Organism_taxid: 602.
(4)
1a
1z88A00
A:7-214
1b
1z88C00
C:6-214
1c
1z88D00
D:4-214
1d
1z88B00
B:6-214
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Acid_phosphat_B_1z88D01 (D:4-198)
1b: PFAM_Acid_phosphat_B_1z88D02 (D:4-198)
1c: PFAM_Acid_phosphat_B_1z88D03 (D:4-198)
1d: PFAM_Acid_phosphat_B_1z88D04 (D:4-198)
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Clan
:
HAD
(186)
Family
:
Acid_phosphat_B
(11)
Salmonella typhimurium
(1)
1a
Acid_phosphat_B-1z88D01
D:4-198
1b
Acid_phosphat_B-1z88D02
D:4-198
1c
Acid_phosphat_B-1z88D03
D:4-198
1d
Acid_phosphat_B-1z88D04
D:4-198
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Asymmetric Unit 1
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Asym.Unit (149 KB)
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