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1Z7Q
Asym. Unit
Info
Asym.Unit (1.5 MB)
Biol.Unit 1, α-C (1.5 MB)
Biol.Unit 1 (1.5 MB)
(using Jmol or JSmol)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE 20S PROTEASOME FROM YEAST IN COMPLEX WITH THE PROTEASOME ACTIVATOR PA26 FROM TRYPANOSOME BRUCEI AT 3.2 ANGSTROMS RESOLUTION
Authors
:
A. Forster, F. G. Whitby, C. P. Hill
Date
:
26 Mar 05 (Deposition) - 09 Aug 05 (Release) - 03 Dec 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.22
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,a,b,c,d,e,f,g,h,i,j,k,l,m,n,o,p
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,a,b,c,d,e,f,g,h,i,j,k,l,m,n,o,p (1x)
Keywords
:
20S, Proteasome, Pa26, Activator, Multi-Catalytic Protease, Hydrolase-Hydrolase Activator Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Forster, E. I. Masters, F. G. Whitby, H. Robinson, C. P. Hill
The 1. 9 A Structure Of A Proteasome-11S Activator Complex And Implications For Proteasome-Pan/Pa700 Interactions.
Mol. Cell V. 18 589 2005
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(4, 50)
Info
All PROSITE Patterns/Profiles
1: PROTEASOME_BETA_2 (K:1-184,Y:1-184,J:8-189,X:8-189,M:...)
2: PROTEASOME_ALPHA_1 (D:4-26,R:4-26,B:5-27,P:5-27,F:6-28...)
3: PROTEASOME_BETA_1 (K:5-52,Y:5-52,J:12-58,X:12-58,H:4-...)
4: PROTEASOME_ALPHA_2 (D:19-233,R:19-233,B:20-247,P:20-24...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEASOME_BETA_2
PS51476
Proteasome beta-type subunit profile.
PSB4_YEAST
1-184
2
K:1-184
Y:1-184
PSB3_YEAST
9-190
2
J:8-189
X:8-189
PSB6_YEAST
28-226
2
M:9-207
a:9-207
PSB7_YEAST
41-233
2
N:8-200
b:8-200
2
PROTEASOME_ALPHA_1
PS00388
Proteasome alpha-type subunits signature.
PSA4_YEAST
4-26
2
D:4-26
R:4-26
PSA2_YEAST
5-27
2
B:5-27
P:5-27
PSA6_YEAST
6-28
2
F:6-28
T:6-28
PSA3_YEAST
6-28
2
C:6-28
Q:6-28
PSA5_YEAST
8-30
2
E:8-30
S:8-30
PSA7_YEAST
8-30
2
G:7-29
U:7-29
PSA1_YEAST
12-34
2
A:12-34
O:12-34
3
PROTEASOME_BETA_1
PS00854
Proteasome beta-type subunits signature.
PSB4_YEAST
5-52
2
K:5-52
Y:5-52
PSB3_YEAST
13-59
2
J:12-58
X:12-58
PSB1_YEAST
23-70
2
H:4-51
V:4-51
PSB6_YEAST
32-79
2
M:13-60
a:13-60
PSB2_YEAST
33-80
2
I:4-51
W:4-51
PSB7_YEAST
45-92
2
N:12-59
b:12-59
PSB5_YEAST
79-126
2
L:4-51
Z:4-51
4
PROTEASOME_ALPHA_2
PS51475
Proteasome alpha-type subunit profile.
PSA4_YEAST
19-233
2
D:19-233
R:19-233
PSA2_YEAST
20-247
2
B:20-247
P:20-247
PSA6_YEAST
21-234
2
F:21-234
T:21-234
PSA3_YEAST
21-239
2
C:21-239
Q:21-239
PSA5_YEAST
23-240
2
E:23-240
S:23-240
PSA7_YEAST
23-240
2
G:22-239
U:22-239
PSA1_YEAST
27-245
2
A:27-245
O:27-245
[
close PROSITE info
]
Exons
(15, 30)
Info
All Exons
Exon 1.1 (M:1-222 | a:1-222)
Exon 2.1 (K:1-198 | Y:1-198)
Exon 3.1 (J:1-204 | X:1-204)
Exon 4.1 (N:1-233 | b:1-233)
Exon 5.1 (A:10-252 | O:10-252)
Exon 6.1 (C:3-245 | Q:3-245)
Exon 7.1 (E:6-250 | S:6-250)
Exon 8.1 (H:1-3 | V:1-3)
Exon 8.2 (H:3-196 | V:3-196)
Exon 9.1 (B:2-250 | P:2-250)
Exon 10.1 (F:1-234 | T:1-234)
Exon 11.1 (D:3-243 | R:3-243)
Exon 12.1 (I:1-222 | W:1-222)
Exon 13.1 (G:5-247 | U:5-247)
Exon 14.1 (L:1-212 | Z:1-212)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/-
03: Boundary -/2.1
04: Boundary 2.1/-
05: Boundary -/3.1
06: Boundary 3.1/-
07: Boundary -/4.1
08: Boundary 4.1/-
09: Boundary -/5.1
10: Boundary 5.1/-
11: Boundary -/6.1
12: Boundary 6.1/-
13: Boundary -/7.1
14: Boundary 7.1/-
15: Boundary -/8.1
16: Boundary 8.1/8.2
17: Boundary 8.2/-
18: Boundary -/9.1
19: Boundary 9.1/-
20: Boundary -/10.1
21: Boundary 10.1/-
22: Boundary -/11.1
23: Boundary 11.1/-
24: Boundary -/12.1
25: Boundary 12.1/-
26: Boundary -/13.1
27: Boundary 13.1/-
28: Boundary -/14.1
29: Boundary 14.1/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YBL041W
1
YBL041W.1
II:141250-141975
726
PSB6_YEAST
1-241
241
2
M:1-222
a:1-222
222
222
2.1
YER012W
1
YER012W.1
V:177834-178430
597
PSB4_YEAST
1-198
198
2
K:1-198
Y:1-198
198
198
3.1
YER094C
1
YER094C.1
V:349342-348725
618
PSB3_YEAST
1-205
205
2
J:1-204
X:1-204
204
204
4.1
YFR050C
1
YFR050C.1
VI:249853-249053
801
PSB7_YEAST
1-266
266
2
N:1-233
b:1-233
233
233
5.1
YGL011C
1
YGL011C.1
VII:475252-474494
759
PSA1_YEAST
1-252
252
2
A:10-252
O:10-252
243
243
6.1
YGR135W
1
YGR135W.1
VII:761397-762173
777
PSA3_YEAST
1-258
258
2
C:3-245
Q:3-245
243
243
7.1
YGR253C
1
YGR253C.1
VII:999145-998363
783
PSA5_YEAST
1-260
260
2
E:6-250
S:6-250
245
245
8.1
YJL001W
1
YJL001W.1
X:435156-435220
65
PSB1_YEAST
1-22
22
2
H:1-3
V:1-3
3
3
8.2
YJL001W
2
YJL001W.2
X:435337-435919
583
PSB1_YEAST
22-215
194
2
H:3-196
V:3-196
194
194
9.1
YML092C
1
YML092C.1
XIII:86739-85987
753
PSA2_YEAST
1-250
250
2
B:2-250
P:2-250
249
249
10.1
YMR314W
1
YMR314W.1
XIII:901708-902412
705
PSA6_YEAST
1-234
234
2
F:1-234
T:1-234
234
234
11.1
YOL038W
1
YOL038W.1
XV:255336-256100
765
PSA4_YEAST
1-254
254
2
D:3-243
R:3-243
241
241
12.1
YOR157C
1
YOR157C.1
XV:631752-630967
786
PSB2_YEAST
1-261
261
2
I:1-222
W:1-222
222
222
13.1
YOR362C
1
YOR362C.1
XV:1018744-1017878
867
PSA7_YEAST
1-288
288
2
G:5-247
U:5-247
243
243
14.1
YPR103W
1
YPR103W.1
XVI:732347-733210
864
PSB5_YEAST
1-287
287
2
L:1-212
Z:1-212
212
212
[
close EXON info
]
SCOP Domains
(2, 24)
Info
All SCOP Domains
1a: SCOP_d1z7qa1 (A:10-252)
1b: SCOP_d1z7qb1 (B:2-250)
1c: SCOP_d1z7qc1 (C:3-245)
1d: SCOP_d1z7qd1 (D:3-243)
1e: SCOP_d1z7qe1 (E:9-250)
1f: SCOP_d1z7qf1 (F:2-234)
1g: SCOP_d1z7qg1 (G:5-247)
1h: SCOP_d1z7qo1 (O:10-252)
1i: SCOP_d1z7qp1 (P:2-250)
1j: SCOP_d1z7qq1 (Q:3-245)
1k: SCOP_d1z7qr1 (R:3-243)
1l: SCOP_d1z7qs1 (S:9-250)
1m: SCOP_d1z7qt1 (T:2-234)
1n: SCOP_d1z7qu1 (U:5-247)
2a: SCOP_d1z7qh1 (H:2-196)
2b: SCOP_d1z7qi1 (I:1-222)
2c: SCOP_d1z7qj1 (J:1-204)
2d: SCOP_d1z7qk1 (K:2-198)
2e: SCOP_d1z7qm1 (M:1-222)
2f: SCOP_d1z7qn1 (N:1-233)
2g: SCOP_d1z7qv1 (V:2-196)
2h: SCOP_d1z7qw1 (W:1-222)
2i: SCOP_d1z7qx1 (X:1-204)
2j: SCOP_d1z7qy1 (Y:2-198)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ntn hydrolase-like
(356)
Superfamily
:
N-terminal nucleophile aminohydrolases (Ntn hydrolases)
(352)
Family
:
Proteasome subunits
(222)
Protein domain
:
Proteasome alpha subunit (non-catalytic)
(66)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(54)
1a
d1z7qa1
A:10-252
1b
d1z7qb1
B:2-250
1c
d1z7qc1
C:3-245
1d
d1z7qd1
D:3-243
1e
d1z7qe1
E:9-250
1f
d1z7qf1
F:2-234
1g
d1z7qg1
G:5-247
1h
d1z7qo1
O:10-252
1i
d1z7qp1
P:2-250
1j
d1z7qq1
Q:3-245
1k
d1z7qr1
R:3-243
1l
d1z7qs1
S:9-250
1m
d1z7qt1
T:2-234
1n
d1z7qu1
U:5-247
Protein domain
:
Proteasome beta subunit (catalytic)
(61)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(51)
2a
d1z7qh1
H:2-196
2b
d1z7qi1
I:1-222
2c
d1z7qj1
J:1-204
2d
d1z7qk1
K:2-198
2e
d1z7qm1
M:1-222
2f
d1z7qn1
N:1-233
2g
d1z7qv1
V:2-196
2h
d1z7qw1
W:1-222
2i
d1z7qx1
X:1-204
2j
d1z7qy1
Y:2-198
[
close SCOP info
]
CATH Domains
(2, 42)
Info
all CATH domains
1a: CATH_1z7qM00 (M:1-222)
1b: CATH_1z7qN00 (N:1-233)
1c: CATH_1z7qb00 (b:1-233)
1d: CATH_1z7qF00 (F:1-234)
1e: CATH_1z7qT00 (T:1-234)
1f: CATH_1z7qL00 (L:1-212)
1g: CATH_1z7qZ00 (Z:1-212)
1h: CATH_1z7qD00 (D:3-243)
1i: CATH_1z7qR00 (R:3-243)
1j: CATH_1z7qA00 (A:10-252)
1k: CATH_1z7qO00 (O:10-252)
1l: CATH_1z7qC00 (C:3-245)
1m: CATH_1z7qQ00 (Q:3-245)
1n: CATH_1z7qG00 (G:5-247)
1o: CATH_1z7qU00 (U:5-247)
1p: CATH_1z7qa00 (a:1-222)
1q: CATH_1z7qH00 (H:1-196)
1r: CATH_1z7qV00 (V:1-196)
1s: CATH_1z7qJ00 (J:1-204)
1t: CATH_1z7qX00 (X:1-204)
1u: CATH_1z7qB00 (B:2-250)
1v: CATH_1z7qP00 (P:2-250)
1w: CATH_1z7qK00 (K:1-198)
1x: CATH_1z7qY00 (Y:1-198)
1y: CATH_1z7qI00 (I:1-222)
1z: CATH_1z7qW00 (W:1-222)
1aa: CATH_1z7qE00 (E:6-250)
1ab: CATH_1z7qS00 (S:6-250)
2a: CATH_1z7qc01 (c:1002-1221)
2b: CATH_1z7qd01 (d:1002-1221)
2c: CATH_1z7qe01 (e:1002-1221)
2d: CATH_1z7qf01 (f:1002-1221)
2e: CATH_1z7qg01 (g:1002-1221)
2f: CATH_1z7qh01 (h:1002-1221)
2g: CATH_1z7qi01 (i:1002-1221)
2h: CATH_1z7qj01 (j:1002-1221)
2i: CATH_1z7qk01 (k:1002-1221)
2j: CATH_1z7ql01 (l:1002-1221)
2k: CATH_1z7qm01 (m:1002-1221)
2l: CATH_1z7qn01 (n:1002-1221)
2m: CATH_1z7qo01 (o:1002-1221)
2n: CATH_1z7qp01 (p:1002-1221)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
4-Layer Sandwich
(459)
Topology
:
Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1
(128)
Homologous Superfamily
:
Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1
(124)
Baker's yeast (Saccharomyces cerevisiae)
(14)
1a
1z7qM00
M:1-222
1b
1z7qN00
N:1-233
1c
1z7qb00
b:1-233
1d
1z7qF00
F:1-234
1e
1z7qT00
T:1-234
1f
1z7qL00
L:1-212
1g
1z7qZ00
Z:1-212
1h
1z7qD00
D:3-243
1i
1z7qR00
R:3-243
1j
1z7qA00
A:10-252
1k
1z7qO00
O:10-252
1l
1z7qC00
C:3-245
1m
1z7qQ00
Q:3-245
1n
1z7qG00
G:5-247
1o
1z7qU00
U:5-247
1p
1z7qa00
a:1-222
1q
1z7qH00
H:1-196
1r
1z7qV00
V:1-196
1s
1z7qJ00
J:1-204
1t
1z7qX00
X:1-204
1u
1z7qB00
B:2-250
1v
1z7qP00
P:2-250
1w
1z7qK00
K:1-198
1x
1z7qY00
Y:1-198
1y
1z7qI00
I:1-222
1z
1z7qW00
W:1-222
1aa
1z7qE00
E:6-250
1ab
1z7qS00
S:6-250
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Four Helix Bundle (Hemerythrin (Met), subunit A)
(300)
Homologous Superfamily
:
[code=1.20.120.180, no name defined]
(10)
Baker's yeast (Saccharomyces cerevisiae)
(2)
2a
1z7qc01
c:1002-1221
2b
1z7qd01
d:1002-1221
2c
1z7qe01
e:1002-1221
2d
1z7qf01
f:1002-1221
2e
1z7qg01
g:1002-1221
2f
1z7qh01
h:1002-1221
2g
1z7qi01
i:1002-1221
2h
1z7qj01
j:1002-1221
2i
1z7qk01
k:1002-1221
2j
1z7ql01
l:1002-1221
2k
1z7qm01
m:1002-1221
2l
1z7qn01
n:1002-1221
2m
1z7qo01
o:1002-1221
2n
1z7qp01
p:1002-1221
[
close CATH info
]
Pfam Domains
(2, 12)
Info
all PFAM domains
1a: PFAM_Proteasome_1z7qP01 (P:28-214)
1b: PFAM_Proteasome_1z7qP02 (P:28-214)
1c: PFAM_Proteasome_1z7qS01 (S:31-222)
1d: PFAM_Proteasome_1z7qS02 (S:31-222)
1e: PFAM_Proteasome_1z7qX01 (X:6-189)
1f: PFAM_Proteasome_1z7qX02 (X:6-189)
1g: PFAM_Proteasome_1z7qZ01 (Z:1-180)
1h: PFAM_Proteasome_1z7qZ02 (Z:1-180)
2a: PFAM_Proteasome_A_N_1z7qP03 (P:5-27)
2b: PFAM_Proteasome_A_N_1z7qP04 (P:5-27)
2c: PFAM_Proteasome_A_N_1z7qS03 (S:8-30)
2d: PFAM_Proteasome_A_N_1z7qS04 (S:8-30)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
NTN
(93)
Family
:
Proteasome
(36)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(13)
1a
Proteasome-1z7qP01
P:28-214
1b
Proteasome-1z7qP02
P:28-214
1c
Proteasome-1z7qS01
S:31-222
1d
Proteasome-1z7qS02
S:31-222
1e
Proteasome-1z7qX01
X:6-189
1f
Proteasome-1z7qX02
X:6-189
1g
Proteasome-1z7qZ01
Z:1-180
1h
Proteasome-1z7qZ02
Z:1-180
Clan
:
no clan defined [family: Proteasome_A_N]
(20)
Family
:
Proteasome_A_N
(20)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(12)
2a
Proteasome_A_N-1z7qP03
P:5-27
2b
Proteasome_A_N-1z7qP04
P:5-27
2c
Proteasome_A_N-1z7qS03
S:8-30
2d
Proteasome_A_N-1z7qS04
S:8-30
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
Chain M
Chain N
Chain O
Chain P
Chain Q
Chain R
Chain S
Chain T
Chain U
Chain V
Chain W
Chain X
Chain Y
Chain Z
Chain a
Chain b
Chain c
Chain d
Chain e
Chain f
Chain g
Chain h
Chain i
Chain j
Chain k
Chain l
Chain m
Chain n
Chain o
Chain p
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
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close
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RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (1.5 MB)
Header - Asym.Unit
Biol.Unit 1 (1.5 MB)
Header - Biol.Unit 1
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You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
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