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1Z7D
Biol. Unit 3
Info
Asym.Unit (371 KB)
Biol.Unit 1 (127 KB)
Biol.Unit 2 (124 KB)
Biol.Unit 3 (125 KB)
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(1)
Title
:
ORNITHINE AMINOTRANSFERASE PY00104 FROM PLASMODIUM YOELII
Authors
:
J. R. Walker, Z. Alam, M. Amani, J. Lew, G. Wasney, K. Boulanger, J. Weigelt, M. Sundstrom, C. Arrowsmith, A. Edwards, A. Bochkarev, R. Hui, M. Vedadi, Structural Genomics Consortium (Sgc)
Date
:
24 Mar 05 (Deposition) - 07 Jul 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Keywords
:
Structural Genomics Consortium, Sgc, Malaria, Plasmodium Yoelii, Ornithine Aminotransferase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
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Reference
:
M. Vedadi, J. Lew, J. Artz, M. Amani, Y. Zhao, A. Dong, G. A. Wasney, M. Gao, T. Hills, S. Brokx, W. Qiu, S. Sharma, A. Diassiti, Z. Alam, M. Melone, A. Mulichak, A. Wernimont, J. Bray, P. Loppnau, O. Plotnikova, K. Newberry, E. Sundararajan, S. Houston, J. Walker, W. Tempel, A. Bochkarev, I. Kozieradzki, A. Edwards, C. Arrowsmith, D. Roos, K. Kain, R. Hui
Genome-Scale Protein Expression And Structural Biology Of Plasmodium Falciparum And Related Apicomplexan Organisms.
Mol. Biochem. Parasitol. V. 151 100 2007
(for further references see the
PDB file header
)
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Hetero Components
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Sites
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PROSITE Patterns/Profiles
(1, 2)
Info
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1: AA_TRANSFER_CLASS_3 (E:229-266,F:229-266)
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
AA_TRANSFER_CLASS_3
PS00600
Aminotransferases class-III pyridoxal-phosphate attachment site.
OAT_PLAYO
230-267
2
-
-
-
-
E:229-266
F:229-266
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1z7da1 (A:7-410)
1b: SCOP_d1z7db_ (B:)
1c: SCOP_d1z7dc_ (C:)
1d: SCOP_d1z7dd_ (D:)
1e: SCOP_d1z7de_ (E:)
1f: SCOP_d1z7df_ (F:)
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Protein Domains
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PLP-dependent transferase-like
(627)
Superfamily
:
PLP-dependent transferases
(625)
Family
:
GABA-aminotransferase-like
(167)
Protein domain
:
Ornithine aminotransferase
(8)
Plasmodium yoelii yoelii [TaxId: 73239]
(1)
1a
d1z7da1
A:7-410
1b
d1z7db_
B:
1c
d1z7dc_
C:
1d
d1z7dd_
D:
1e
d1z7de_
E:
1f
d1z7df_
F:
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CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_1z7dA02 (A:63-312)
1b: CATH_1z7dB02 (B:63-312)
1c: CATH_1z7dD02 (D:63-312)
1d: CATH_1z7dF02 (F:63-312)
1e: CATH_1z7dE02 (E:63-312)
1f: CATH_1z7dC02 (C:63-312)
2a: CATH_1z7dA01 (A:7-62,A:313-410)
2b: CATH_1z7dB01 (B:7-62,B:313-410)
2c: CATH_1z7dC01 (C:7-62,C:313-410)
2d: CATH_1z7dD01 (D:7-62,D:313-410)
2e: CATH_1z7dE01 (E:7-62,E:313-410)
2f: CATH_1z7dF01 (F:7-62,F:313-410)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aspartate Aminotransferase; domain 2
(384)
Homologous Superfamily
:
Type I PLP-dependent aspartate aminotransferase-like (Major domain)
(384)
Plasmodium yoelii yoelii. Organism_taxid: 73239. Strain: yoelii.
(1)
1a
1z7dA02
A:63-312
1b
1z7dB02
B:63-312
1c
1z7dD02
D:63-312
1d
1z7dF02
F:63-312
1e
1z7dE02
E:63-312
1f
1z7dC02
C:63-312
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Aspartate Aminotransferase, domain 1
(355)
Homologous Superfamily
:
Aspartate Aminotransferase, domain 1
(354)
Plasmodium yoelii yoelii. Organism_taxid: 73239. Strain: yoelii.
(1)
2a
1z7dA01
A:7-62,A:313-410
2b
1z7dB01
B:7-62,B:313-410
2c
1z7dC01
C:7-62,C:313-410
2d
1z7dD01
D:7-62,D:313-410
2e
1z7dE01
E:7-62,E:313-410
2f
1z7dF01
F:7-62,F:313-410
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_Aminotran_3_1z7dF01 (F:30-355)
1b: PFAM_Aminotran_3_1z7dF02 (F:30-355)
1c: PFAM_Aminotran_3_1z7dF03 (F:30-355)
1d: PFAM_Aminotran_3_1z7dF04 (F:30-355)
1e: PFAM_Aminotran_3_1z7dF05 (F:30-355)
1f: PFAM_Aminotran_3_1z7dF06 (F:30-355)
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Clan
:
PLP_aminotran
(240)
Family
:
Aminotran_3
(44)
Plasmodium yoelii yoelii
(1)
1a
Aminotran_3-1z7dF01
F:30-355
1b
Aminotran_3-1z7dF02
F:30-355
1c
Aminotran_3-1z7dF03
F:30-355
1d
Aminotran_3-1z7dF04
F:30-355
1e
Aminotran_3-1z7dF05
F:30-355
1f
Aminotran_3-1z7dF06
F:30-355
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (371 KB)
Header - Asym.Unit
Biol.Unit 1 (127 KB)
Header - Biol.Unit 1
Biol.Unit 2 (124 KB)
Header - Biol.Unit 2
Biol.Unit 3 (125 KB)
Header - Biol.Unit 3
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