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1Z7A
Biol. Unit 2
Info
Asym.Unit (470 KB)
Biol.Unit 1 (232 KB)
Biol.Unit 2 (232 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PROBABLE POLYSACCHARIDE DEACETYLASE FROM PSEUDOMONAS AERUGINOSA PAO1
Authors
:
C. Chang, T. Skarina, A. Savchenko, A. M. Edwards, A. Joachimiak, Midwe For Structural Genomics (Mcsg)
Date
:
24 Mar 05 (Deposition) - 10 May 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.71
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Hypothetical Protein Structural Genomics, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Chang, T. Skarina, A. Savchenko, A. M. Edwards, A. Joachimiak
Crystal Structure Of Probable Polysaccharide Deacetylase From Pseudomonas Aeruginosa Pao1
To Be Published
[
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Hetero Components
(4, 62)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
1s: 1,2-ETHANEDIOL (EDOs)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
3a: ISOPROPYL ALCOHOL (IPAa)
3b: ISOPROPYL ALCOHOL (IPAb)
3c: ISOPROPYL ALCOHOL (IPAc)
3d: ISOPROPYL ALCOHOL (IPAd)
3e: ISOPROPYL ALCOHOL (IPAe)
3f: ISOPROPYL ALCOHOL (IPAf)
3g: ISOPROPYL ALCOHOL (IPAg)
3h: ISOPROPYL ALCOHOL (IPAh)
4a: SELENOMETHIONINE (MSEa)
4aa: SELENOMETHIONINE (MSEaa)
4ab: SELENOMETHIONINE (MSEab)
4ac: SELENOMETHIONINE (MSEac)
4ad: SELENOMETHIONINE (MSEad)
4ae: SELENOMETHIONINE (MSEae)
4af: SELENOMETHIONINE (MSEaf)
4ag: SELENOMETHIONINE (MSEag)
4ah: SELENOMETHIONINE (MSEah)
4ai: SELENOMETHIONINE (MSEai)
4aj: SELENOMETHIONINE (MSEaj)
4ak: SELENOMETHIONINE (MSEak)
4al: SELENOMETHIONINE (MSEal)
4am: SELENOMETHIONINE (MSEam)
4an: SELENOMETHIONINE (MSEan)
4ao: SELENOMETHIONINE (MSEao)
4ap: SELENOMETHIONINE (MSEap)
4aq: SELENOMETHIONINE (MSEaq)
4ar: SELENOMETHIONINE (MSEar)
4as: SELENOMETHIONINE (MSEas)
4at: SELENOMETHIONINE (MSEat)
4au: SELENOMETHIONINE (MSEau)
4av: SELENOMETHIONINE (MSEav)
4aw: SELENOMETHIONINE (MSEaw)
4ax: SELENOMETHIONINE (MSEax)
4ay: SELENOMETHIONINE (MSEay)
4az: SELENOMETHIONINE (MSEaz)
4b: SELENOMETHIONINE (MSEb)
4ba: SELENOMETHIONINE (MSEba)
4bb: SELENOMETHIONINE (MSEbb)
4bc: SELENOMETHIONINE (MSEbc)
4bd: SELENOMETHIONINE (MSEbd)
4be: SELENOMETHIONINE (MSEbe)
4bf: SELENOMETHIONINE (MSEbf)
4bg: SELENOMETHIONINE (MSEbg)
4bh: SELENOMETHIONINE (MSEbh)
4bi: SELENOMETHIONINE (MSEbi)
4bj: SELENOMETHIONINE (MSEbj)
4bk: SELENOMETHIONINE (MSEbk)
4bl: SELENOMETHIONINE (MSEbl)
4bm: SELENOMETHIONINE (MSEbm)
4bn: SELENOMETHIONINE (MSEbn)
4bo: SELENOMETHIONINE (MSEbo)
4bp: SELENOMETHIONINE (MSEbp)
4bq: SELENOMETHIONINE (MSEbq)
4br: SELENOMETHIONINE (MSEbr)
4bs: SELENOMETHIONINE (MSEbs)
4bt: SELENOMETHIONINE (MSEbt)
4bu: SELENOMETHIONINE (MSEbu)
4bv: SELENOMETHIONINE (MSEbv)
4bw: SELENOMETHIONINE (MSEbw)
4bx: SELENOMETHIONINE (MSEbx)
4by: SELENOMETHIONINE (MSEby)
4bz: SELENOMETHIONINE (MSEbz)
4c: SELENOMETHIONINE (MSEc)
4ca: SELENOMETHIONINE (MSEca)
4cb: SELENOMETHIONINE (MSEcb)
4cc: SELENOMETHIONINE (MSEcc)
4cd: SELENOMETHIONINE (MSEcd)
4ce: SELENOMETHIONINE (MSEce)
4cf: SELENOMETHIONINE (MSEcf)
4cg: SELENOMETHIONINE (MSEcg)
4ch: SELENOMETHIONINE (MSEch)
4ci: SELENOMETHIONINE (MSEci)
4cj: SELENOMETHIONINE (MSEcj)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
4f: SELENOMETHIONINE (MSEf)
4g: SELENOMETHIONINE (MSEg)
4h: SELENOMETHIONINE (MSEh)
4i: SELENOMETHIONINE (MSEi)
4j: SELENOMETHIONINE (MSEj)
4k: SELENOMETHIONINE (MSEk)
4l: SELENOMETHIONINE (MSEl)
4m: SELENOMETHIONINE (MSEm)
4n: SELENOMETHIONINE (MSEn)
4o: SELENOMETHIONINE (MSEo)
4p: SELENOMETHIONINE (MSEp)
4q: SELENOMETHIONINE (MSEq)
4r: SELENOMETHIONINE (MSEr)
4s: SELENOMETHIONINE (MSEs)
4t: SELENOMETHIONINE (MSEt)
4u: SELENOMETHIONINE (MSEu)
4v: SELENOMETHIONINE (MSEv)
4w: SELENOMETHIONINE (MSEw)
4x: SELENOMETHIONINE (MSEx)
4y: SELENOMETHIONINE (MSEy)
4z: SELENOMETHIONINE (MSEz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
11
Ligand/Ion
1,2-ETHANEDIOL
2
GOL
4
Ligand/Ion
GLYCEROL
3
IPA
3
Ligand/Ion
ISOPROPYL ALCOHOL
4
MSE
44
Mod. Amino Acid
SELENOMETHIONINE
[
close Hetero Component info
]
Sites
(19, 19)
Info
All Sites
01: AC4 (SOFTWARE)
02: AC5 (SOFTWARE)
03: AC8 (SOFTWARE)
04: AC9 (SOFTWARE)
05: BC1 (SOFTWARE)
06: BC2 (SOFTWARE)
07: BC3 (SOFTWARE)
08: BC7 (SOFTWARE)
09: BC8 (SOFTWARE)
10: BC9 (SOFTWARE)
11: CC1 (SOFTWARE)
12: CC5 (SOFTWARE)
13: CC6 (SOFTWARE)
14: CC7 (SOFTWARE)
15: CC8 (SOFTWARE)
16: DC4 (SOFTWARE)
17: DC5 (SOFTWARE)
18: DC6 (SOFTWARE)
19: DC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC4
SOFTWARE
HIS F:18 , ASP F:24 , ARG F:26 , GLY F:247 , ALA F:248 , HOH F:543
BINDING SITE FOR RESIDUE EDO F 309
02
AC5
SOFTWARE
ARG B:114 , HIS H:18 , ASP H:24 , ARG H:26 , GLY H:247 , ALA H:248 , HOH H:579
BINDING SITE FOR RESIDUE EDO H 309
03
AC8
SOFTWARE
ALA G:115 , ASP G:119 , HOH G:378 , HOH G:484
BINDING SITE FOR RESIDUE EDO G 309
04
AC9
SOFTWARE
ALA E:115 , ASP E:119 , HOH E:381 , HOH E:521
BINDING SITE FOR RESIDUE EDO E 309
05
BC1
SOFTWARE
ALA H:115 , ASP H:119 , HOH H:381
BINDING SITE FOR RESIDUE EDO H 310
06
BC2
SOFTWARE
ARG A:114 , HIS E:18 , ASP E:24 , GLY E:247 , ALA E:248
BINDING SITE FOR RESIDUE EDO E 310
07
BC3
SOFTWARE
ARG C:114 , HIS G:18 , ASP G:24 , ARG G:26 , GLY G:247 , HOH G:547
BINDING SITE FOR RESIDUE EDO G 310
08
BC7
SOFTWARE
ARG E:80 , TYR F:12 , TYR F:195 , HOH F:391 , HOH F:404
BINDING SITE FOR RESIDUE EDO E 311
09
BC8
SOFTWARE
ARG F:80 , ASP G:8 , GLY G:11 , TYR G:12 , TYR G:195 , HOH G:381 , HOH G:388
BINDING SITE FOR RESIDUE EDO F 310
10
BC9
SOFTWARE
ARG G:80 , GLY H:11 , TYR H:12 , TYR H:195 , HOH H:384 , HOH H:410
BINDING SITE FOR RESIDUE EDO G 311
11
CC1
SOFTWARE
GLY E:11 , TYR E:12 , TYR E:195 , HOH E:390 , ARG H:80
BINDING SITE FOR RESIDUE EDO H 311
12
CC5
SOFTWARE
ILE F:123 , THR F:156 , GLN F:158 , GLU F:291 , HOH F:458 , HOH F:468
BINDING SITE FOR RESIDUE GOL F 311
13
CC6
SOFTWARE
GLU H:122 , ILE H:123 , THR H:156 , GLN H:158 , GLU H:291 , HOH H:426 , HOH H:430
BINDING SITE FOR RESIDUE GOL H 312
14
CC7
SOFTWARE
ILE G:123 , THR G:156 , GLN G:158 , ARG G:159 , GLU G:291 , HOH G:434 , HOH G:459
BINDING SITE FOR RESIDUE GOL G 312
15
CC8
SOFTWARE
GLU E:122 , ILE E:123 , THR E:156 , GLN E:158 , GLU E:291 , HOH E:434 , HOH E:442 , HOH E:563
BINDING SITE FOR RESIDUE GOL E 312
16
DC4
SOFTWARE
PRO B:96 , TRP B:286 , PHE B:287 , ALA B:288 , ARG B:289 , ASP B:292 , LYS G:91 , ALA G:118 , ASP G:119 , HOH G:518
BINDING SITE FOR RESIDUE IPA B 313
17
DC5
SOFTWARE
TRP D:286 , PHE D:287 , ALA D:288 , ARG D:289 , ASP D:292 , HOH D:349 , LYS E:91 , ALA E:118 , ASP E:119
BINDING SITE FOR RESIDUE IPA E 313
18
DC6
SOFTWARE
LEU F:87 , LYS F:88 , LYS F:91 , ASP F:119
BINDING SITE FOR RESIDUE IPA F 312
19
DC7
SOFTWARE
PHE A:287 , ALA A:288 , ARG A:289 , ASP A:292 , HOH A:350 , LYS H:91 , ALA H:118 , ASP H:119
BINDING SITE FOR RESIDUE IPA H 313
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1z7ab_ (B:)
1b: SCOP_d1z7ac_ (C:)
1c: SCOP_d1z7ad_ (D:)
1d: SCOP_d1z7ae_ (E:)
1e: SCOP_d1z7af_ (F:)
1f: SCOP_d1z7ag_ (G:)
1g: SCOP_d1z7ah_ (H:)
2a: SCOP_d1z7aa1 (A:4-304)
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Classes
(
)
(
)
Folds
(
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(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
7-stranded beta/alpha barrel
(137)
Superfamily
:
Glycoside hydrolase/deacetylase
(89)
Family
:
PA1517-like
(6)
Protein domain
:
automated matches
(5)
Pseudomonas aeruginosa [TaxId: 208964]
(1)
1a
d1z7ab_
B:
1b
d1z7ac_
C:
1c
d1z7ad_
D:
1d
d1z7ae_
E:
1e
d1z7af_
F:
1f
d1z7ag_
G:
1g
d1z7ah_
H:
Protein domain
:
Hypothetical protein PA1517
(1)
Pseudomonas aeruginosa [TaxId: 287]
(1)
2a
d1z7aa1
A:4-304
[
close SCOP info
]
CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1z7aC00 (C:5-304)
1b: CATH_1z7aD00 (D:5-304)
1c: CATH_1z7aA00 (A:4-304)
1d: CATH_1z7aB00 (B:4-304)
1e: CATH_1z7aE00 (E:4-304)
1f: CATH_1z7aF00 (F:5-305)
1g: CATH_1z7aG00 (G:4-304)
1h: CATH_1z7aH00 (H:5-305)
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Classes
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Topologies
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Glycoside hydrolase/deacetylase
(11)
Pseudomonas aeruginosa pao1. Organism_taxid: 208964. Strain: pao1.
(1)
1a
1z7aC00
C:5-304
1b
1z7aD00
D:5-304
1c
1z7aA00
A:4-304
1d
1z7aB00
B:4-304
1e
1z7aE00
E:4-304
1f
1z7aF00
F:5-305
1g
1z7aG00
G:4-304
1h
1z7aH00
H:5-305
[
close CATH info
]
Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Polysacc_deac_1_1z7aH01 (H:67-185)
1b: PFAM_Polysacc_deac_1_1z7aH02 (H:67-185)
1c: PFAM_Polysacc_deac_1_1z7aH03 (H:67-185)
1d: PFAM_Polysacc_deac_1_1z7aH04 (H:67-185)
1e: PFAM_Polysacc_deac_1_1z7aH05 (H:67-185)
1f: PFAM_Polysacc_deac_1_1z7aH06 (H:67-185)
1g: PFAM_Polysacc_deac_1_1z7aH07 (H:67-185)
1h: PFAM_Polysacc_deac_1_1z7aH08 (H:67-185)
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Clans
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)
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Families
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)
(
)
Organisms
(
)
(
)
Clan
:
GH_CE
(28)
Family
:
Polysacc_deac_1
(9)
Pseudomonas aeruginosa
(1)
1a
Polysacc_deac_1-1z7aH01
H:67-185
1b
Polysacc_deac_1-1z7aH02
H:67-185
1c
Polysacc_deac_1-1z7aH03
H:67-185
1d
Polysacc_deac_1-1z7aH04
H:67-185
1e
Polysacc_deac_1-1z7aH05
H:67-185
1f
Polysacc_deac_1-1z7aH06
H:67-185
1g
Polysacc_deac_1-1z7aH07
H:67-185
1h
Polysacc_deac_1-1z7aH08
H:67-185
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