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1Z7A
Biol. Unit 1
Info
Asym.Unit (470 KB)
Biol.Unit 1 (232 KB)
Biol.Unit 2 (232 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PROBABLE POLYSACCHARIDE DEACETYLASE FROM PSEUDOMONAS AERUGINOSA PAO1
Authors
:
C. Chang, T. Skarina, A. Savchenko, A. M. Edwards, A. Joachimiak, Midwe For Structural Genomics (Mcsg)
Date
:
24 Mar 05 (Deposition) - 10 May 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.71
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Hypothetical Protein Structural Genomics, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Chang, T. Skarina, A. Savchenko, A. M. Edwards, A. Joachimiak
Crystal Structure Of Probable Polysaccharide Deacetylase From Pseudomonas Aeruginosa Pao1
To Be Published
[
close entry info
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Hetero Components
(4, 60)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
1s: 1,2-ETHANEDIOL (EDOs)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
3a: ISOPROPYL ALCOHOL (IPAa)
3b: ISOPROPYL ALCOHOL (IPAb)
3c: ISOPROPYL ALCOHOL (IPAc)
3d: ISOPROPYL ALCOHOL (IPAd)
3e: ISOPROPYL ALCOHOL (IPAe)
3f: ISOPROPYL ALCOHOL (IPAf)
3g: ISOPROPYL ALCOHOL (IPAg)
3h: ISOPROPYL ALCOHOL (IPAh)
4a: SELENOMETHIONINE (MSEa)
4aa: SELENOMETHIONINE (MSEaa)
4ab: SELENOMETHIONINE (MSEab)
4ac: SELENOMETHIONINE (MSEac)
4ad: SELENOMETHIONINE (MSEad)
4ae: SELENOMETHIONINE (MSEae)
4af: SELENOMETHIONINE (MSEaf)
4ag: SELENOMETHIONINE (MSEag)
4ah: SELENOMETHIONINE (MSEah)
4ai: SELENOMETHIONINE (MSEai)
4aj: SELENOMETHIONINE (MSEaj)
4ak: SELENOMETHIONINE (MSEak)
4al: SELENOMETHIONINE (MSEal)
4am: SELENOMETHIONINE (MSEam)
4an: SELENOMETHIONINE (MSEan)
4ao: SELENOMETHIONINE (MSEao)
4ap: SELENOMETHIONINE (MSEap)
4aq: SELENOMETHIONINE (MSEaq)
4ar: SELENOMETHIONINE (MSEar)
4as: SELENOMETHIONINE (MSEas)
4at: SELENOMETHIONINE (MSEat)
4au: SELENOMETHIONINE (MSEau)
4av: SELENOMETHIONINE (MSEav)
4aw: SELENOMETHIONINE (MSEaw)
4ax: SELENOMETHIONINE (MSEax)
4ay: SELENOMETHIONINE (MSEay)
4az: SELENOMETHIONINE (MSEaz)
4b: SELENOMETHIONINE (MSEb)
4ba: SELENOMETHIONINE (MSEba)
4bb: SELENOMETHIONINE (MSEbb)
4bc: SELENOMETHIONINE (MSEbc)
4bd: SELENOMETHIONINE (MSEbd)
4be: SELENOMETHIONINE (MSEbe)
4bf: SELENOMETHIONINE (MSEbf)
4bg: SELENOMETHIONINE (MSEbg)
4bh: SELENOMETHIONINE (MSEbh)
4bi: SELENOMETHIONINE (MSEbi)
4bj: SELENOMETHIONINE (MSEbj)
4bk: SELENOMETHIONINE (MSEbk)
4bl: SELENOMETHIONINE (MSEbl)
4bm: SELENOMETHIONINE (MSEbm)
4bn: SELENOMETHIONINE (MSEbn)
4bo: SELENOMETHIONINE (MSEbo)
4bp: SELENOMETHIONINE (MSEbp)
4bq: SELENOMETHIONINE (MSEbq)
4br: SELENOMETHIONINE (MSEbr)
4bs: SELENOMETHIONINE (MSEbs)
4bt: SELENOMETHIONINE (MSEbt)
4bu: SELENOMETHIONINE (MSEbu)
4bv: SELENOMETHIONINE (MSEbv)
4bw: SELENOMETHIONINE (MSEbw)
4bx: SELENOMETHIONINE (MSEbx)
4by: SELENOMETHIONINE (MSEby)
4bz: SELENOMETHIONINE (MSEbz)
4c: SELENOMETHIONINE (MSEc)
4ca: SELENOMETHIONINE (MSEca)
4cb: SELENOMETHIONINE (MSEcb)
4cc: SELENOMETHIONINE (MSEcc)
4cd: SELENOMETHIONINE (MSEcd)
4ce: SELENOMETHIONINE (MSEce)
4cf: SELENOMETHIONINE (MSEcf)
4cg: SELENOMETHIONINE (MSEcg)
4ch: SELENOMETHIONINE (MSEch)
4ci: SELENOMETHIONINE (MSEci)
4cj: SELENOMETHIONINE (MSEcj)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
4f: SELENOMETHIONINE (MSEf)
4g: SELENOMETHIONINE (MSEg)
4h: SELENOMETHIONINE (MSEh)
4i: SELENOMETHIONINE (MSEi)
4j: SELENOMETHIONINE (MSEj)
4k: SELENOMETHIONINE (MSEk)
4l: SELENOMETHIONINE (MSEl)
4m: SELENOMETHIONINE (MSEm)
4n: SELENOMETHIONINE (MSEn)
4o: SELENOMETHIONINE (MSEo)
4p: SELENOMETHIONINE (MSEp)
4q: SELENOMETHIONINE (MSEq)
4r: SELENOMETHIONINE (MSEr)
4s: SELENOMETHIONINE (MSEs)
4t: SELENOMETHIONINE (MSEt)
4u: SELENOMETHIONINE (MSEu)
4v: SELENOMETHIONINE (MSEv)
4w: SELENOMETHIONINE (MSEw)
4x: SELENOMETHIONINE (MSEx)
4y: SELENOMETHIONINE (MSEy)
4z: SELENOMETHIONINE (MSEz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
8
Ligand/Ion
1,2-ETHANEDIOL
2
GOL
3
Ligand/Ion
GLYCEROL
3
IPA
5
Ligand/Ion
ISOPROPYL ALCOHOL
4
MSE
44
Mod. Amino Acid
SELENOMETHIONINE
[
close Hetero Component info
]
Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC5 (SOFTWARE)
05: AC6 (SOFTWARE)
06: AC7 (SOFTWARE)
07: BC2 (SOFTWARE)
08: BC3 (SOFTWARE)
09: BC4 (SOFTWARE)
10: BC5 (SOFTWARE)
11: BC6 (SOFTWARE)
12: CC2 (SOFTWARE)
13: CC3 (SOFTWARE)
14: CC4 (SOFTWARE)
15: CC9 (SOFTWARE)
16: DC1 (SOFTWARE)
17: DC2 (SOFTWARE)
18: DC3 (SOFTWARE)
19: DC4 (SOFTWARE)
20: DC5 (SOFTWARE)
21: DC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS B:18 , ASP B:24 , ARG B:26 , GLY B:247 , ALA B:248 , PRO B:251 , LYS B:284 , HOH B:487
BINDING SITE FOR RESIDUE EDO B 309
02
AC2
SOFTWARE
HIS C:18 , ASP C:24 , ARG C:26 , GLY C:247 , ALA C:248 , PRO C:251 , LYS C:284 , HOH C:498
BINDING SITE FOR RESIDUE EDO C 309
03
AC3
SOFTWARE
HIS D:18 , ASP D:24 , ARG D:26 , GLY D:247 , ALA D:248 , PRO D:251 , LYS D:284 , HOH D:519
BINDING SITE FOR RESIDUE EDO D 309
04
AC5
SOFTWARE
ARG B:114 , HIS H:18 , ASP H:24 , ARG H:26 , GLY H:247 , ALA H:248 , HOH H:579
BINDING SITE FOR RESIDUE EDO H 309
05
AC6
SOFTWARE
HIS A:18 , ASP A:24 , ARG A:26 , GLY A:247 , ALA A:248 , PRO A:251
BINDING SITE FOR RESIDUE EDO A 309
06
AC7
SOFTWARE
GLY A:11 , TYR A:12 , TYR A:195 , HOH A:386 , HOH A:421 , ARG D:80
BINDING SITE FOR RESIDUE EDO D 310
07
BC2
SOFTWARE
ARG A:114 , HIS E:18 , ASP E:24 , GLY E:247 , ALA E:248
BINDING SITE FOR RESIDUE EDO E 310
08
BC3
SOFTWARE
ARG C:114 , HIS G:18 , ASP G:24 , ARG G:26 , GLY G:247 , HOH G:547
BINDING SITE FOR RESIDUE EDO G 310
09
BC4
SOFTWARE
ARG A:80 , GLY B:11 , TYR B:195 , HOH B:398 , HOH B:405
BINDING SITE FOR RESIDUE EDO A 310
10
BC5
SOFTWARE
ARG B:80 , ASP C:8 , GLY C:11 , TYR C:12 , TYR C:195 , HOH C:382 , HOH C:400
BINDING SITE FOR RESIDUE EDO B 310
11
BC6
SOFTWARE
ARG C:80 , GLY D:11 , TYR D:12 , TYR D:195 , HOH D:386 , HOH D:401
BINDING SITE FOR RESIDUE EDO C 310
12
CC2
SOFTWARE
ILE A:123 , LEU A:152 , THR A:156 , GLN A:158 , ARG A:159 , PRO A:160 , HOH A:412 , HOH A:496 , HOH A:513
BINDING SITE FOR RESIDUE GOL A 311
13
CC3
SOFTWARE
ILE B:123 , THR B:156 , GLN B:158 , ARG B:159 , GLU B:291 , HOH B:450 , HOH B:504 , HOH B:505 , HOH B:564
BINDING SITE FOR RESIDUE GOL B 311
14
CC4
SOFTWARE
GLU D:122 , ILE D:123 , THR D:156 , GLN D:158 , ARG D:159 , GLU D:291 , HOH D:435 , HOH D:557 , HOH D:558
BINDING SITE FOR RESIDUE GOL D 311
15
CC9
SOFTWARE
LYS D:88 , ASP D:119
BINDING SITE FOR RESIDUE IPA D 312
16
DC1
SOFTWARE
TRP A:84 , LYS A:88 , LYS A:91 , ASP A:119 , HOH A:448 , ASN B:14
BINDING SITE FOR RESIDUE IPA A 312
17
DC2
SOFTWARE
TRP B:84 , LYS B:88 , LYS B:91 , ASP B:119 , ASN C:14
BINDING SITE FOR RESIDUE IPA B 312
18
DC3
SOFTWARE
TRP C:84 , LYS C:88 , LYS C:91 , ASP C:119 , ASN D:14
BINDING SITE FOR RESIDUE IPA C 311
19
DC4
SOFTWARE
PRO B:96 , TRP B:286 , PHE B:287 , ALA B:288 , ARG B:289 , ASP B:292 , LYS G:91 , ALA G:118 , ASP G:119 , HOH G:518
BINDING SITE FOR RESIDUE IPA B 313
20
DC5
SOFTWARE
TRP D:286 , PHE D:287 , ALA D:288 , ARG D:289 , ASP D:292 , HOH D:349 , LYS E:91 , ALA E:118 , ASP E:119
BINDING SITE FOR RESIDUE IPA E 313
21
DC7
SOFTWARE
PHE A:287 , ALA A:288 , ARG A:289 , ASP A:292 , HOH A:350 , LYS H:91 , ALA H:118 , ASP H:119
BINDING SITE FOR RESIDUE IPA H 313
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1z7ab_ (B:)
1b: SCOP_d1z7ac_ (C:)
1c: SCOP_d1z7ad_ (D:)
1d: SCOP_d1z7ae_ (E:)
1e: SCOP_d1z7af_ (F:)
1f: SCOP_d1z7ag_ (G:)
1g: SCOP_d1z7ah_ (H:)
2a: SCOP_d1z7aa1 (A:4-304)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
7-stranded beta/alpha barrel
(137)
Superfamily
:
Glycoside hydrolase/deacetylase
(89)
Family
:
PA1517-like
(6)
Protein domain
:
automated matches
(5)
Pseudomonas aeruginosa [TaxId: 208964]
(1)
1a
d1z7ab_
B:
1b
d1z7ac_
C:
1c
d1z7ad_
D:
1d
d1z7ae_
E:
1e
d1z7af_
F:
1f
d1z7ag_
G:
1g
d1z7ah_
H:
Protein domain
:
Hypothetical protein PA1517
(1)
Pseudomonas aeruginosa [TaxId: 287]
(1)
2a
d1z7aa1
A:4-304
[
close SCOP info
]
CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1z7aC00 (C:5-304)
1b: CATH_1z7aD00 (D:5-304)
1c: CATH_1z7aA00 (A:4-304)
1d: CATH_1z7aB00 (B:4-304)
1e: CATH_1z7aE00 (E:4-304)
1f: CATH_1z7aF00 (F:5-305)
1g: CATH_1z7aG00 (G:4-304)
1h: CATH_1z7aH00 (H:5-305)
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Topologies
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Glycoside hydrolase/deacetylase
(11)
Pseudomonas aeruginosa pao1. Organism_taxid: 208964. Strain: pao1.
(1)
1a
1z7aC00
C:5-304
1b
1z7aD00
D:5-304
1c
1z7aA00
A:4-304
1d
1z7aB00
B:4-304
1e
1z7aE00
E:4-304
1f
1z7aF00
F:5-305
1g
1z7aG00
G:4-304
1h
1z7aH00
H:5-305
[
close CATH info
]
Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Polysacc_deac_1_1z7aH01 (H:67-185)
1b: PFAM_Polysacc_deac_1_1z7aH02 (H:67-185)
1c: PFAM_Polysacc_deac_1_1z7aH03 (H:67-185)
1d: PFAM_Polysacc_deac_1_1z7aH04 (H:67-185)
1e: PFAM_Polysacc_deac_1_1z7aH05 (H:67-185)
1f: PFAM_Polysacc_deac_1_1z7aH06 (H:67-185)
1g: PFAM_Polysacc_deac_1_1z7aH07 (H:67-185)
1h: PFAM_Polysacc_deac_1_1z7aH08 (H:67-185)
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Clans
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)
Clan
:
GH_CE
(28)
Family
:
Polysacc_deac_1
(9)
Pseudomonas aeruginosa
(1)
1a
Polysacc_deac_1-1z7aH01
H:67-185
1b
Polysacc_deac_1-1z7aH02
H:67-185
1c
Polysacc_deac_1-1z7aH03
H:67-185
1d
Polysacc_deac_1-1z7aH04
H:67-185
1e
Polysacc_deac_1-1z7aH05
H:67-185
1f
Polysacc_deac_1-1z7aH06
H:67-185
1g
Polysacc_deac_1-1z7aH07
H:67-185
1h
Polysacc_deac_1-1z7aH08
H:67-185
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