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1Z7A
Asym. Unit
Info
Asym.Unit (470 KB)
Biol.Unit 1 (232 KB)
Biol.Unit 2 (232 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PROBABLE POLYSACCHARIDE DEACETYLASE FROM PSEUDOMONAS AERUGINOSA PAO1
Authors
:
C. Chang, T. Skarina, A. Savchenko, A. M. Edwards, A. Joachimiak, Midwe For Structural Genomics (Mcsg)
Date
:
24 Mar 05 (Deposition) - 10 May 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.71
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Hypothetical Protein Structural Genomics, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Chang, T. Skarina, A. Savchenko, A. M. Edwards, A. Joachimiak
Crystal Structure Of Probable Polysaccharide Deacetylase From Pseudomonas Aeruginosa Pao1
To Be Published
[
close entry info
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Hetero Components
(4, 122)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
1s: 1,2-ETHANEDIOL (EDOs)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
3a: ISOPROPYL ALCOHOL (IPAa)
3b: ISOPROPYL ALCOHOL (IPAb)
3c: ISOPROPYL ALCOHOL (IPAc)
3d: ISOPROPYL ALCOHOL (IPAd)
3e: ISOPROPYL ALCOHOL (IPAe)
3f: ISOPROPYL ALCOHOL (IPAf)
3g: ISOPROPYL ALCOHOL (IPAg)
3h: ISOPROPYL ALCOHOL (IPAh)
4a: SELENOMETHIONINE (MSEa)
4aa: SELENOMETHIONINE (MSEaa)
4ab: SELENOMETHIONINE (MSEab)
4ac: SELENOMETHIONINE (MSEac)
4ad: SELENOMETHIONINE (MSEad)
4ae: SELENOMETHIONINE (MSEae)
4af: SELENOMETHIONINE (MSEaf)
4ag: SELENOMETHIONINE (MSEag)
4ah: SELENOMETHIONINE (MSEah)
4ai: SELENOMETHIONINE (MSEai)
4aj: SELENOMETHIONINE (MSEaj)
4ak: SELENOMETHIONINE (MSEak)
4al: SELENOMETHIONINE (MSEal)
4am: SELENOMETHIONINE (MSEam)
4an: SELENOMETHIONINE (MSEan)
4ao: SELENOMETHIONINE (MSEao)
4ap: SELENOMETHIONINE (MSEap)
4aq: SELENOMETHIONINE (MSEaq)
4ar: SELENOMETHIONINE (MSEar)
4as: SELENOMETHIONINE (MSEas)
4at: SELENOMETHIONINE (MSEat)
4au: SELENOMETHIONINE (MSEau)
4av: SELENOMETHIONINE (MSEav)
4aw: SELENOMETHIONINE (MSEaw)
4ax: SELENOMETHIONINE (MSEax)
4ay: SELENOMETHIONINE (MSEay)
4az: SELENOMETHIONINE (MSEaz)
4b: SELENOMETHIONINE (MSEb)
4ba: SELENOMETHIONINE (MSEba)
4bb: SELENOMETHIONINE (MSEbb)
4bc: SELENOMETHIONINE (MSEbc)
4bd: SELENOMETHIONINE (MSEbd)
4be: SELENOMETHIONINE (MSEbe)
4bf: SELENOMETHIONINE (MSEbf)
4bg: SELENOMETHIONINE (MSEbg)
4bh: SELENOMETHIONINE (MSEbh)
4bi: SELENOMETHIONINE (MSEbi)
4bj: SELENOMETHIONINE (MSEbj)
4bk: SELENOMETHIONINE (MSEbk)
4bl: SELENOMETHIONINE (MSEbl)
4bm: SELENOMETHIONINE (MSEbm)
4bn: SELENOMETHIONINE (MSEbn)
4bo: SELENOMETHIONINE (MSEbo)
4bp: SELENOMETHIONINE (MSEbp)
4bq: SELENOMETHIONINE (MSEbq)
4br: SELENOMETHIONINE (MSEbr)
4bs: SELENOMETHIONINE (MSEbs)
4bt: SELENOMETHIONINE (MSEbt)
4bu: SELENOMETHIONINE (MSEbu)
4bv: SELENOMETHIONINE (MSEbv)
4bw: SELENOMETHIONINE (MSEbw)
4bx: SELENOMETHIONINE (MSEbx)
4by: SELENOMETHIONINE (MSEby)
4bz: SELENOMETHIONINE (MSEbz)
4c: SELENOMETHIONINE (MSEc)
4ca: SELENOMETHIONINE (MSEca)
4cb: SELENOMETHIONINE (MSEcb)
4cc: SELENOMETHIONINE (MSEcc)
4cd: SELENOMETHIONINE (MSEcd)
4ce: SELENOMETHIONINE (MSEce)
4cf: SELENOMETHIONINE (MSEcf)
4cg: SELENOMETHIONINE (MSEcg)
4ch: SELENOMETHIONINE (MSEch)
4ci: SELENOMETHIONINE (MSEci)
4cj: SELENOMETHIONINE (MSEcj)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
4f: SELENOMETHIONINE (MSEf)
4g: SELENOMETHIONINE (MSEg)
4h: SELENOMETHIONINE (MSEh)
4i: SELENOMETHIONINE (MSEi)
4j: SELENOMETHIONINE (MSEj)
4k: SELENOMETHIONINE (MSEk)
4l: SELENOMETHIONINE (MSEl)
4m: SELENOMETHIONINE (MSEm)
4n: SELENOMETHIONINE (MSEn)
4o: SELENOMETHIONINE (MSEo)
4p: SELENOMETHIONINE (MSEp)
4q: SELENOMETHIONINE (MSEq)
4r: SELENOMETHIONINE (MSEr)
4s: SELENOMETHIONINE (MSEs)
4t: SELENOMETHIONINE (MSEt)
4u: SELENOMETHIONINE (MSEu)
4v: SELENOMETHIONINE (MSEv)
4w: SELENOMETHIONINE (MSEw)
4x: SELENOMETHIONINE (MSEx)
4y: SELENOMETHIONINE (MSEy)
4z: SELENOMETHIONINE (MSEz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
19
Ligand/Ion
1,2-ETHANEDIOL
2
GOL
7
Ligand/Ion
GLYCEROL
3
IPA
8
Ligand/Ion
ISOPROPYL ALCOHOL
4
MSE
88
Mod. Amino Acid
SELENOMETHIONINE
[
close Hetero Component info
]
Sites
(34, 34)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS B:18 , ASP B:24 , ARG B:26 , GLY B:247 , ALA B:248 , PRO B:251 , LYS B:284 , HOH B:487
BINDING SITE FOR RESIDUE EDO B 309
02
AC2
SOFTWARE
HIS C:18 , ASP C:24 , ARG C:26 , GLY C:247 , ALA C:248 , PRO C:251 , LYS C:284 , HOH C:498
BINDING SITE FOR RESIDUE EDO C 309
03
AC3
SOFTWARE
HIS D:18 , ASP D:24 , ARG D:26 , GLY D:247 , ALA D:248 , PRO D:251 , LYS D:284 , HOH D:519
BINDING SITE FOR RESIDUE EDO D 309
04
AC4
SOFTWARE
HIS F:18 , ASP F:24 , ARG F:26 , GLY F:247 , ALA F:248 , HOH F:543
BINDING SITE FOR RESIDUE EDO F 309
05
AC5
SOFTWARE
ARG B:114 , HIS H:18 , ASP H:24 , ARG H:26 , GLY H:247 , ALA H:248 , HOH H:579
BINDING SITE FOR RESIDUE EDO H 309
06
AC6
SOFTWARE
HIS A:18 , ASP A:24 , ARG A:26 , GLY A:247 , ALA A:248 , PRO A:251
BINDING SITE FOR RESIDUE EDO A 309
07
AC7
SOFTWARE
GLY A:11 , TYR A:12 , TYR A:195 , HOH A:386 , HOH A:421 , ARG D:80
BINDING SITE FOR RESIDUE EDO D 310
08
AC8
SOFTWARE
ALA G:115 , ASP G:119 , HOH G:378 , HOH G:484
BINDING SITE FOR RESIDUE EDO G 309
09
AC9
SOFTWARE
ALA E:115 , ASP E:119 , HOH E:381 , HOH E:521
BINDING SITE FOR RESIDUE EDO E 309
10
BC1
SOFTWARE
ALA H:115 , ASP H:119 , HOH H:381
BINDING SITE FOR RESIDUE EDO H 310
11
BC2
SOFTWARE
ARG A:114 , HIS E:18 , ASP E:24 , GLY E:247 , ALA E:248
BINDING SITE FOR RESIDUE EDO E 310
12
BC3
SOFTWARE
ARG C:114 , HIS G:18 , ASP G:24 , ARG G:26 , GLY G:247 , HOH G:547
BINDING SITE FOR RESIDUE EDO G 310
13
BC4
SOFTWARE
ARG A:80 , GLY B:11 , TYR B:195 , HOH B:398 , HOH B:405
BINDING SITE FOR RESIDUE EDO A 310
14
BC5
SOFTWARE
ARG B:80 , ASP C:8 , GLY C:11 , TYR C:12 , TYR C:195 , HOH C:382 , HOH C:400
BINDING SITE FOR RESIDUE EDO B 310
15
BC6
SOFTWARE
ARG C:80 , GLY D:11 , TYR D:12 , TYR D:195 , HOH D:386 , HOH D:401
BINDING SITE FOR RESIDUE EDO C 310
16
BC7
SOFTWARE
ARG E:80 , TYR F:12 , TYR F:195 , HOH F:391 , HOH F:404
BINDING SITE FOR RESIDUE EDO E 311
17
BC8
SOFTWARE
ARG F:80 , ASP G:8 , GLY G:11 , TYR G:12 , TYR G:195 , HOH G:381 , HOH G:388
BINDING SITE FOR RESIDUE EDO F 310
18
BC9
SOFTWARE
ARG G:80 , GLY H:11 , TYR H:12 , TYR H:195 , HOH H:384 , HOH H:410
BINDING SITE FOR RESIDUE EDO G 311
19
CC1
SOFTWARE
GLY E:11 , TYR E:12 , TYR E:195 , HOH E:390 , ARG H:80
BINDING SITE FOR RESIDUE EDO H 311
20
CC2
SOFTWARE
ILE A:123 , LEU A:152 , THR A:156 , GLN A:158 , ARG A:159 , PRO A:160 , HOH A:412 , HOH A:496 , HOH A:513
BINDING SITE FOR RESIDUE GOL A 311
21
CC3
SOFTWARE
ILE B:123 , THR B:156 , GLN B:158 , ARG B:159 , GLU B:291 , HOH B:450 , HOH B:504 , HOH B:505 , HOH B:564
BINDING SITE FOR RESIDUE GOL B 311
22
CC4
SOFTWARE
GLU D:122 , ILE D:123 , THR D:156 , GLN D:158 , ARG D:159 , GLU D:291 , HOH D:435 , HOH D:557 , HOH D:558
BINDING SITE FOR RESIDUE GOL D 311
23
CC5
SOFTWARE
ILE F:123 , THR F:156 , GLN F:158 , GLU F:291 , HOH F:458 , HOH F:468
BINDING SITE FOR RESIDUE GOL F 311
24
CC6
SOFTWARE
GLU H:122 , ILE H:123 , THR H:156 , GLN H:158 , GLU H:291 , HOH H:426 , HOH H:430
BINDING SITE FOR RESIDUE GOL H 312
25
CC7
SOFTWARE
ILE G:123 , THR G:156 , GLN G:158 , ARG G:159 , GLU G:291 , HOH G:434 , HOH G:459
BINDING SITE FOR RESIDUE GOL G 312
26
CC8
SOFTWARE
GLU E:122 , ILE E:123 , THR E:156 , GLN E:158 , GLU E:291 , HOH E:434 , HOH E:442 , HOH E:563
BINDING SITE FOR RESIDUE GOL E 312
27
CC9
SOFTWARE
LYS D:88 , ASP D:119
BINDING SITE FOR RESIDUE IPA D 312
28
DC1
SOFTWARE
TRP A:84 , LYS A:88 , LYS A:91 , ASP A:119 , HOH A:448 , ASN B:14
BINDING SITE FOR RESIDUE IPA A 312
29
DC2
SOFTWARE
TRP B:84 , LYS B:88 , LYS B:91 , ASP B:119 , ASN C:14
BINDING SITE FOR RESIDUE IPA B 312
30
DC3
SOFTWARE
TRP C:84 , LYS C:88 , LYS C:91 , ASP C:119 , ASN D:14
BINDING SITE FOR RESIDUE IPA C 311
31
DC4
SOFTWARE
PRO B:96 , TRP B:286 , PHE B:287 , ALA B:288 , ARG B:289 , ASP B:292 , LYS G:91 , ALA G:118 , ASP G:119 , HOH G:518
BINDING SITE FOR RESIDUE IPA B 313
32
DC5
SOFTWARE
TRP D:286 , PHE D:287 , ALA D:288 , ARG D:289 , ASP D:292 , HOH D:349 , LYS E:91 , ALA E:118 , ASP E:119
BINDING SITE FOR RESIDUE IPA E 313
33
DC6
SOFTWARE
LEU F:87 , LYS F:88 , LYS F:91 , ASP F:119
BINDING SITE FOR RESIDUE IPA F 312
34
DC7
SOFTWARE
PHE A:287 , ALA A:288 , ARG A:289 , ASP A:292 , HOH A:350 , LYS H:91 , ALA H:118 , ASP H:119
BINDING SITE FOR RESIDUE IPA H 313
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1z7ab_ (B:)
1b: SCOP_d1z7ac_ (C:)
1c: SCOP_d1z7ad_ (D:)
1d: SCOP_d1z7ae_ (E:)
1e: SCOP_d1z7af_ (F:)
1f: SCOP_d1z7ag_ (G:)
1g: SCOP_d1z7ah_ (H:)
2a: SCOP_d1z7aa1 (A:4-304)
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
7-stranded beta/alpha barrel
(137)
Superfamily
:
Glycoside hydrolase/deacetylase
(89)
Family
:
PA1517-like
(6)
Protein domain
:
automated matches
(5)
Pseudomonas aeruginosa [TaxId: 208964]
(1)
1a
d1z7ab_
B:
1b
d1z7ac_
C:
1c
d1z7ad_
D:
1d
d1z7ae_
E:
1e
d1z7af_
F:
1f
d1z7ag_
G:
1g
d1z7ah_
H:
Protein domain
:
Hypothetical protein PA1517
(1)
Pseudomonas aeruginosa [TaxId: 287]
(1)
2a
d1z7aa1
A:4-304
[
close SCOP info
]
CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1z7aC00 (C:5-304)
1b: CATH_1z7aD00 (D:5-304)
1c: CATH_1z7aA00 (A:4-304)
1d: CATH_1z7aB00 (B:4-304)
1e: CATH_1z7aE00 (E:4-304)
1f: CATH_1z7aF00 (F:5-305)
1g: CATH_1z7aG00 (G:4-304)
1h: CATH_1z7aH00 (H:5-305)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Glycoside hydrolase/deacetylase
(11)
Pseudomonas aeruginosa pao1. Organism_taxid: 208964. Strain: pao1.
(1)
1a
1z7aC00
C:5-304
1b
1z7aD00
D:5-304
1c
1z7aA00
A:4-304
1d
1z7aB00
B:4-304
1e
1z7aE00
E:4-304
1f
1z7aF00
F:5-305
1g
1z7aG00
G:4-304
1h
1z7aH00
H:5-305
[
close CATH info
]
Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Polysacc_deac_1_1z7aH01 (H:67-185)
1b: PFAM_Polysacc_deac_1_1z7aH02 (H:67-185)
1c: PFAM_Polysacc_deac_1_1z7aH03 (H:67-185)
1d: PFAM_Polysacc_deac_1_1z7aH04 (H:67-185)
1e: PFAM_Polysacc_deac_1_1z7aH05 (H:67-185)
1f: PFAM_Polysacc_deac_1_1z7aH06 (H:67-185)
1g: PFAM_Polysacc_deac_1_1z7aH07 (H:67-185)
1h: PFAM_Polysacc_deac_1_1z7aH08 (H:67-185)
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Clans
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Families
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(
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Organisms
(
)
(
)
Clan
:
GH_CE
(28)
Family
:
Polysacc_deac_1
(9)
Pseudomonas aeruginosa
(1)
1a
Polysacc_deac_1-1z7aH01
H:67-185
1b
Polysacc_deac_1-1z7aH02
H:67-185
1c
Polysacc_deac_1-1z7aH03
H:67-185
1d
Polysacc_deac_1-1z7aH04
H:67-185
1e
Polysacc_deac_1-1z7aH05
H:67-185
1f
Polysacc_deac_1-1z7aH06
H:67-185
1g
Polysacc_deac_1-1z7aH07
H:67-185
1h
Polysacc_deac_1-1z7aH08
H:67-185
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