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1Z6Z
Biol. Unit 2
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Asym.Unit (250 KB)
Biol.Unit 1 (85 KB)
Biol.Unit 2 (85 KB)
Biol.Unit 3 (80 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN SEPIAPTERIN REDUCTASE IN COMPLEX WITH NADP+
Authors
:
E. Ugochukwu, K. Kavanagh, S. Ng, C. Arrowsmith, A. Edwards, M. Sundstr Delft, U. Oppermann, Structural Genomics Consortium (Sgc)
Date
:
23 Mar 05 (Deposition) - 05 Apr 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Keywords
:
Short-Chain Dehydrogenase/Reductase, Sepiapterin Reductase, Human, Structural Genomics, Structural Genomics Consortium, Sgc, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Ugochukwu, K. Kavanagh, S. Ng, C. Arrowsmith, A. Edwards, M. Sundstrom, F. Von Delft, U. Oppermann
Crystal Structure Of Human Sepiapterin Reductase
To Be Published
[
close entry info
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
1k: CHLORIDE ION (CLk)
2a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
2b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
2c: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPc)
2d: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPd)
2e: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPe)
2f: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPf)
3a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
NAP
2
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
3
SO4
-1
Ligand/Ion
SULFATE ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC3 (SOFTWARE)
3: AC4 (SOFTWARE)
4: AC5 (SOFTWARE)
5: AC6 (SOFTWARE)
6: AC9 (SOFTWARE)
7: BC5 (SOFTWARE)
8: BC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:87 , GLY A:88 , LEU A:89 , ARG C:45
BINDING SITE FOR RESIDUE SO4 A 301
2
AC3
SOFTWARE
ARG C:39
BINDING SITE FOR RESIDUE CL C 402
3
AC4
SOFTWARE
ARG D:39
BINDING SITE FOR RESIDUE CL D 403
4
AC5
SOFTWARE
GLY C:88
BINDING SITE FOR RESIDUE CL C 405
5
AC6
SOFTWARE
TYR B:-4 , TYR C:167 , NAP C:803
BINDING SITE FOR RESIDUE CL C 406
6
AC9
SOFTWARE
SER D:154 , TYR D:167 , NAP D:804
BINDING SITE FOR RESIDUE CL D 409
7
BC5
SOFTWARE
GLY C:11 , SER C:13 , ARG C:14 , GLY C:15 , PHE C:16 , ARG C:39 , ASN C:40 , ALA C:65 , ASP C:66 , LEU C:67 , ASN C:97 , ALA C:98 , LEU C:123 , ILE C:152 , SER C:153 , TYR C:167 , LYS C:171 , PRO C:195 , GLY C:196 , PRO C:197 , LEU C:198 , THR C:200 , MET C:202 , GLN C:203 , CL C:406 , HOH C:808 , HOH C:836 , HOH C:837 , HOH C:857 , HOH C:863
BINDING SITE FOR RESIDUE NAP C 803
8
BC6
SOFTWARE
GLY D:11 , SER D:13 , ARG D:14 , GLY D:15 , PHE D:16 , ALA D:38 , ARG D:39 , ASN D:40 , ALA D:65 , ASP D:66 , LEU D:67 , ASN D:97 , ALA D:98 , LEU D:123 , ILE D:152 , SER D:153 , TYR D:167 , LYS D:171 , PRO D:195 , GLY D:196 , PRO D:197 , LEU D:198 , THR D:200 , MET D:202 , GLN D:203 , CL D:409 , HOH D:808 , HOH D:811 , HOH D:817 , HOH D:837
BINDING SITE FOR RESIDUE NAP D 804
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SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_058007 (R147G, chain C/D, )
2: VAR_058008 (P160L, chain C/D, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_058007
R
150
G
SPRE_HUMAN
Disease (DRDSPRD)
---
C/D
R
147
G
2
UniProt
VAR_058008
P
163
L
SPRE_HUMAN
Disease (DRDSPRD)
---
C/D
P
160
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
Info
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;
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End label:
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1z6za1 (A:2-258)
1b: SCOP_d1z6zc_ (C:)
1c: SCOP_d1z6zd_ (D:)
1d: SCOP_d1z6ze_ (E:)
1e: SCOP_d1z6zf_ (F:)
1f: SCOP_d1z6zb_ (B:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Tyrosine-dependent oxidoreductases
(503)
Protein domain
:
Sepiapterin reductase
(7)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d1z6za1
A:2-258
1b
d1z6zc_
C:
1c
d1z6zd_
D:
1d
d1z6ze_
E:
1e
d1z6zf_
F:
1f
d1z6zb_
B:
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1z6zE00 (E:-4-258)
1b: CATH_1z6zD00 (D:-5-258)
1c: CATH_1z6zF00 (F:-5-258)
1d: CATH_1z6zB00 (B:-5-258)
1e: CATH_1z6zA00 (A:-5-258)
1f: CATH_1z6zC00 (C:-5-258)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Human (Homo sapiens)
(188)
1a
1z6zE00
E:-4-258
1b
1z6zD00
D:-5-258
1c
1z6zF00
F:-5-258
1d
1z6zB00
B:-5-258
1e
1z6zA00
A:-5-258
1f
1z6zC00
C:-5-258
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_adh_short_1z6zF01 (F:5-185)
1b: PFAM_adh_short_1z6zF02 (F:5-185)
1c: PFAM_adh_short_1z6zF03 (F:5-185)
1d: PFAM_adh_short_1z6zF04 (F:5-185)
1e: PFAM_adh_short_1z6zF05 (F:5-185)
1f: PFAM_adh_short_1z6zF06 (F:5-185)
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(
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)
(
)
Clan
:
NADP_Rossmann
(1239)
Family
:
adh_short
(92)
Homo sapiens (Human)
(21)
1a
adh_short-1z6zF01
F:5-185
1b
adh_short-1z6zF02
F:5-185
1c
adh_short-1z6zF03
F:5-185
1d
adh_short-1z6zF04
F:5-185
1e
adh_short-1z6zF05
F:5-185
1f
adh_short-1z6zF06
F:5-185
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Asymmetric Unit 1
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