PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
1Z6Z
Biol. Unit 1
Info
Asym.Unit (250 KB)
Biol.Unit 1 (85 KB)
Biol.Unit 2 (85 KB)
Biol.Unit 3 (80 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN SEPIAPTERIN REDUCTASE IN COMPLEX WITH NADP+
Authors
:
E. Ugochukwu, K. Kavanagh, S. Ng, C. Arrowsmith, A. Edwards, M. Sundstr Delft, U. Oppermann, Structural Genomics Consortium (Sgc)
Date
:
23 Mar 05 (Deposition) - 05 Apr 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Keywords
:
Short-Chain Dehydrogenase/Reductase, Sepiapterin Reductase, Human, Structural Genomics, Structural Genomics Consortium, Sgc, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Ugochukwu, K. Kavanagh, S. Ng, C. Arrowsmith, A. Edwards, M. Sundstrom, F. Von Delft, U. Oppermann
Crystal Structure Of Human Sepiapterin Reductase
To Be Published
[
close entry info
]
Hetero Components
(2, 3)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
1k: CHLORIDE ION (CLk)
2a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
2b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
2c: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPc)
2d: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPd)
2e: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPe)
2f: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPf)
3a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
NAP
2
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
3
SO4
1
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC6 (SOFTWARE)
4: AC7 (SOFTWARE)
5: AC8 (SOFTWARE)
6: BC3 (SOFTWARE)
7: BC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:87 , GLY A:88 , LEU A:89 , ARG C:45
BINDING SITE FOR RESIDUE SO4 A 301
2
AC2
SOFTWARE
ARG A:39
BINDING SITE FOR RESIDUE CL A 401
3
AC6
SOFTWARE
TYR B:-4 , TYR C:167 , NAP C:803
BINDING SITE FOR RESIDUE CL C 406
4
AC7
SOFTWARE
SER A:154 , TYR A:167 , NAP A:801
BINDING SITE FOR RESIDUE CL A 407
5
AC8
SOFTWARE
SER B:154 , TYR B:167 , NAP B:802
BINDING SITE FOR RESIDUE CL B 408
6
BC3
SOFTWARE
GLY A:11 , SER A:13 , ARG A:14 , GLY A:15 , PHE A:16 , ALA A:38 , ARG A:39 , ASN A:40 , ALA A:65 , ASP A:66 , LEU A:67 , ASN A:97 , LEU A:123 , ILE A:152 , SER A:153 , TYR A:167 , LYS A:171 , PRO A:195 , GLY A:196 , PRO A:197 , LEU A:198 , THR A:200 , MET A:202 , GLN A:203 , CL A:407 , HOH A:802 , HOH A:808 , HOH A:831 , HOH A:843 , HOH A:851 , HOH A:856
BINDING SITE FOR RESIDUE NAP A 801
7
BC4
SOFTWARE
GLY B:11 , SER B:13 , ARG B:14 , GLY B:15 , PHE B:16 , ARG B:39 , ASN B:40 , ALA B:65 , ASP B:66 , LEU B:67 , ASN B:97 , ALA B:98 , LEU B:123 , ILE B:152 , SER B:153 , TYR B:167 , LYS B:171 , PRO B:195 , GLY B:196 , PRO B:197 , LEU B:198 , THR B:200 , MET B:202 , GLN B:203 , CL B:408 , HOH B:826 , HOH B:829
BINDING SITE FOR RESIDUE NAP B 802
[
close Site info
]
SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_058007 (R147G, chain A/B, )
2: VAR_058008 (P160L, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_058007
R
150
G
SPRE_HUMAN
Disease (DRDSPRD)
---
A/B
R
147
G
2
UniProt
VAR_058008
P
163
L
SPRE_HUMAN
Disease (DRDSPRD)
---
A/B
P
160
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1z6za1 (A:2-258)
1b: SCOP_d1z6zc_ (C:)
1c: SCOP_d1z6zd_ (D:)
1d: SCOP_d1z6ze_ (E:)
1e: SCOP_d1z6zf_ (F:)
1f: SCOP_d1z6zb_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Tyrosine-dependent oxidoreductases
(503)
Protein domain
:
Sepiapterin reductase
(7)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d1z6za1
A:2-258
1b
d1z6zc_
C:
1c
d1z6zd_
D:
1d
d1z6ze_
E:
1e
d1z6zf_
F:
1f
d1z6zb_
B:
[
close SCOP info
]
CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1z6zE00 (E:-4-258)
1b: CATH_1z6zD00 (D:-5-258)
1c: CATH_1z6zF00 (F:-5-258)
1d: CATH_1z6zB00 (B:-5-258)
1e: CATH_1z6zA00 (A:-5-258)
1f: CATH_1z6zC00 (C:-5-258)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Human (Homo sapiens)
(188)
1a
1z6zE00
E:-4-258
1b
1z6zD00
D:-5-258
1c
1z6zF00
F:-5-258
1d
1z6zB00
B:-5-258
1e
1z6zA00
A:-5-258
1f
1z6zC00
C:-5-258
[
close CATH info
]
Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_adh_short_1z6zF01 (F:5-185)
1b: PFAM_adh_short_1z6zF02 (F:5-185)
1c: PFAM_adh_short_1z6zF03 (F:5-185)
1d: PFAM_adh_short_1z6zF04 (F:5-185)
1e: PFAM_adh_short_1z6zF05 (F:5-185)
1f: PFAM_adh_short_1z6zF06 (F:5-185)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
NADP_Rossmann
(1239)
Family
:
adh_short
(92)
Homo sapiens (Human)
(21)
1a
adh_short-1z6zF01
F:5-185
1b
adh_short-1z6zF02
F:5-185
1c
adh_short-1z6zF03
F:5-185
1d
adh_short-1z6zF04
F:5-185
1e
adh_short-1z6zF05
F:5-185
1f
adh_short-1z6zF06
F:5-185
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (250 KB)
Header - Asym.Unit
Biol.Unit 1 (85 KB)
Header - Biol.Unit 1
Biol.Unit 2 (85 KB)
Header - Biol.Unit 2
Biol.Unit 3 (80 KB)
Header - Biol.Unit 3
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1Z6Z
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
