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1Z6Y
Asym. Unit
Info
Asym.Unit (64 KB)
Biol.Unit 1 (31 KB)
Biol.Unit 2 (31 KB)
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(1)
Title
:
STRUCTURE OF HUMAN ADP-RIBOSYLATION FACTOR-LIKE 5
Authors
:
J. Choe, A. Atanassova, C. Arrowsmith, A. Edwards, M. Sundstrom, A. Bochkarev, H. Park, Structural Genomics Consortium (Sgc)
Date
:
23 Mar 05 (Deposition) - 05 Apr 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Gdp-Binding, Membrane Trafficking, Structural Genomics, Structural Genomics Consortium, Sgc, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Atanassova, J. Choe, C. Arrowsmith, A. Edwards, M. Sundstrom, A. Bochkarev, H. Park
Structure Of Human Adp-Ribosylation Factor-Like 5
To Be Published
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
1b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GDP
2
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
[
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:26 , ALA A:27 , GLY A:28 , LYS A:29 , THR A:30 , THR A:31 , ASN A:125 , LYS A:126 , ASP A:128 , CYS A:158 , ALA A:159 , LEU A:160 , HOH A:224 , HOH A:328 , GLN B:140
BINDING SITE FOR RESIDUE GDP A 180
2
AC2
SOFTWARE
GLN A:140 , ASN B:26 , ALA B:27 , GLY B:28 , LYS B:29 , THR B:30 , THR B:31 , ASN B:125 , LYS B:126 , ASP B:128 , CYS B:158 , ALA B:159 , LEU B:160 , HOH B:238 , HOH B:242 , HOH B:247 , HOH B:329
BINDING SITE FOR RESIDUE GDP B 180
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ARF (A:10-175,B:10-175)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ARF
PS51417
small GTPase Arf family profile.
ARL5A_HUMAN
10-176
2
A:10-175
B:10-175
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Exons
(6, 12)
Info
All Exons
Exon 1.1d (A:3-16 | B:3-16)
Exon 1.3a (A:16-36 | B:16-36)
Exon 1.4 (A:36-85 (gaps) | B:36-85 (gaps))
Exon 1.5 (A:86-113 | B:86-113)
Exon 1.7 (A:114-164 | B:114-164)
Exon 1.8d (A:164-175 | B:164-175)
View:
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All Exon Boundaries
1: Boundary -/1.1d
2: Boundary 1.1d/1.3a
3: Boundary 1.3a/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.7
6: Boundary 1.7/1.8d
7: Boundary 1.8d/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1d
ENST00000295087
1d
ENSE00001364904
chr2:
152685002-152684645
358
ARL5A_HUMAN
1-16
16
2
A:3-16
B:3-16
14
14
1.3a
ENST00000295087
3a
ENSE00001655660
chr2:
152671713-152671653
61
ARL5A_HUMAN
16-36
21
2
A:16-36
B:16-36
21
21
1.4
ENST00000295087
4
ENSE00001724503
chr2:
152670830-152670683
148
ARL5A_HUMAN
36-85
50
2
A:36-85 (gaps)
B:36-85 (gaps)
50
50
1.5
ENST00000295087
5
ENSE00001070294
chr2:
152668954-152668871
84
ARL5A_HUMAN
86-113
28
2
A:86-113
B:86-113
28
28
1.7
ENST00000295087
7
ENSE00001795074
chr2:
152663486-152663335
152
ARL5A_HUMAN
114-164
51
2
A:114-164
B:114-164
51
51
1.8d
ENST00000295087
8d
ENSE00001827771
chr2:
152659838-152655316
4523
ARL5A_HUMAN
164-179
16
2
A:164-175
B:164-175
12
12
[
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]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1z6ya_ (A:)
1b: SCOP_d1z6yb_ (B:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
automated matches
(303)
Protein domain
:
automated matches
(303)
Human (Homo sapiens) [TaxId: 9606]
(86)
1a
d1z6ya_
A:
1b
d1z6yb_
B:
[
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]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1z6yA00 (A:3-175)
1b: CATH_1z6yB00 (B:3-175)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
1z6yA00
A:3-175
1b
1z6yB00
B:3-175
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Arf_1z6yB01 (B:5-175)
1b: PFAM_Arf_1z6yB02 (B:5-175)
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Clan
:
P-loop_NTPase
(1112)
Family
:
Arf
(26)
Homo sapiens (Human)
(9)
1a
Arf-1z6yB01
B:5-175
1b
Arf-1z6yB02
B:5-175
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (64 KB)
Header - Asym.Unit
Biol.Unit 1 (31 KB)
Header - Biol.Unit 1
Biol.Unit 2 (31 KB)
Header - Biol.Unit 2
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