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1Z6O
Asym. Unit
Info
Asym.Unit (875 KB)
Biol.Unit 1 (866 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TRICHOPLUSIA NI SECRETED FERRITIN
Authors
:
A. E. Hamburger, A. P. West Jr. , Z. A. Hamburger, P. Hamburger, P. J. Bjorkman
Date
:
22 Mar 05 (Deposition) - 24 May 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.91
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X (1x)
Keywords
:
Metal Binding Protein, Iron Storage
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. E. Hamburger, A. P. West, Z. A. Hamburger, P. Hamburger, P. J. Bjorkman
Crystal Structure Of A Secreted Insect Ferritin Reveals A Symmetrical Arrangement Of Heavy And Light Chains.
J. Mol. Biol. V. 349 558 2005
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 24)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
2a: FE (III) ION (FEa)
2b: FE (III) ION (FEb)
2c: FE (III) ION (FEc)
2d: FE (III) ION (FEd)
2e: FE (III) ION (FEe)
2f: FE (III) ION (FEf)
2g: FE (III) ION (FEg)
2h: FE (III) ION (FEh)
2i: FE (III) ION (FEi)
2j: FE (III) ION (FEj)
2k: FE (III) ION (FEk)
2l: FE (III) ION (FEl)
2m: FE (III) ION (FEm)
2n: FE (III) ION (FEn)
2o: FE (III) ION (FEo)
2p: FE (III) ION (FEp)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
8
Ligand/Ion
CALCIUM ION
2
FE
16
Ligand/Ion
FE (III) ION
[
close Hetero Component info
]
Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:165 , HOH A:5443 , GLU E:165 , HOH E:370 , GLU L:165 , HOH L:217
BINDING SITE FOR RESIDUE FE A 301
02
AC2
SOFTWARE
GLN A:161 , GLU A:164 , GLN E:161 , GLU E:164 , GLN L:161 , GLU L:164
BINDING SITE FOR RESIDUE CA A 5302
03
AC3
SOFTWARE
GLU A:164 , HOH A:5324 , GLU E:164 , HOH E:247 , GLU L:164 , HOH L:213 , HOH L:254
BINDING SITE FOR RESIDUE CA A 5303
04
AC4
SOFTWARE
GLU B:165 , HOH B:6457 , GLU D:165 , HOH D:552 , GLU K:165 , HOH K:1296
BINDING SITE FOR RESIDUE FE B 301
05
AC5
SOFTWARE
GLN B:161 , GLU B:164 , GLN D:161 , GLU D:164 , GLN K:161 , GLU K:164
BINDING SITE FOR RESIDUE CA B 6302
06
AC6
SOFTWARE
GLU B:164 , HOH B:6326 , GLU D:164 , HOH D:376 , HOH D:1201 , GLU K:164 , HOH K:3797
BINDING SITE FOR RESIDUE CA B 6303
07
AC7
SOFTWARE
GLU C:165 , HOH C:2785 , GLU H:165 , HOH H:3154 , GLU I:165 , HOH I:924
BINDING SITE FOR RESIDUE FE C 301
08
AC8
SOFTWARE
GLN C:161 , GLU C:164 , GLN H:161 , GLU H:164 , GLN I:161 , GLU I:164
BINDING SITE FOR RESIDUE CA C 7302
09
AC9
SOFTWARE
GLU C:164 , HOH C:829 , GLU H:164 , HOH H:748 , HOH H:2690 , GLU I:164 , HOH I:3059
BINDING SITE FOR RESIDUE CA C 7303
10
BC1
SOFTWARE
GLU F:165 , HOH F:2413 , GLU G:165 , HOH G:3523 , GLU J:165 , HOH J:2039
BINDING SITE FOR RESIDUE FE F 301
11
BC2
SOFTWARE
GLN F:161 , GLU F:164 , GLN G:161 , GLU G:164 , GLN J:161 , GLU J:164
BINDING SITE FOR RESIDUE CA F 8302
12
BC3
SOFTWARE
GLU F:164 , HOH F:1863 , HOH F:1944 , GLU G:164 , HOH G:2318 , GLU J:164 , HOH J:3428
BINDING SITE FOR RESIDUE CA F 8303
13
BC4
SOFTWARE
GLU M:32 , GLU M:67 , HIS M:70 , HOH M:330 , HOH M:333
BINDING SITE FOR RESIDUE FE M 300
14
BC5
SOFTWARE
GLU N:32 , GLU N:67 , HIS N:70 , HOH N:332 , HOH N:334
BINDING SITE FOR RESIDUE FE N 300
15
BC6
SOFTWARE
GLU O:32 , GLU O:67 , HIS O:70 , HOH O:351 , HOH O:354
BINDING SITE FOR RESIDUE FE O 300
16
BC7
SOFTWARE
GLU P:32 , GLU P:67 , HIS P:70 , HOH P:335 , HOH P:338
BINDING SITE FOR RESIDUE FE P 300
17
BC8
SOFTWARE
GLU Q:32 , GLU Q:67 , HIS Q:70 , HOH Q:1541 , HOH Q:1547
BINDING SITE FOR RESIDUE FE Q 300
18
BC9
SOFTWARE
GLU R:32 , GLU R:67 , HIS R:70 , HOH R:1913 , HOH R:1919
BINDING SITE FOR RESIDUE FE R 300
19
CC1
SOFTWARE
GLU S:32 , GLU S:67 , HIS S:70 , HOH S:2287 , HOH S:2293
BINDING SITE FOR RESIDUE FE S 300
20
CC2
SOFTWARE
GLU T:32 , GLU T:67 , HIS T:70 , HOH T:2659 , HOH T:2665
BINDING SITE FOR RESIDUE FE T 300
21
CC3
SOFTWARE
GLU U:32 , GLU U:67 , HIS U:70 , HOH U:3028 , HOH U:3034
BINDING SITE FOR RESIDUE FE U 300
22
CC4
SOFTWARE
GLU V:32 , GLU V:67 , HIS V:70 , HOH V:3397 , HOH V:3403
BINDING SITE FOR RESIDUE FE V 300
23
CC5
SOFTWARE
GLU W:32 , GLU W:67 , HIS W:70 , HOH W:3766 , HOH W:3772
BINDING SITE FOR RESIDUE FE W 300
24
CC6
SOFTWARE
GLU X:32 , GLU X:67 , HIS X:70 , HOH X:354 , HOH X:357
BINDING SITE FOR RESIDUE FE X 300
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 24)
Info
All SCOP Domains
1a: SCOP_d1z6on_ (N:)
1b: SCOP_d1z6oo_ (O:)
1c: SCOP_d1z6ox_ (X:)
1d: SCOP_d1z6op_ (P:)
1e: SCOP_d1z6oq_ (Q:)
1f: SCOP_d1z6or_ (R:)
1g: SCOP_d1z6os_ (S:)
1h: SCOP_d1z6ot_ (T:)
1i: SCOP_d1z6ou_ (U:)
1j: SCOP_d1z6ov_ (V:)
1k: SCOP_d1z6ow_ (W:)
2a: SCOP_d1z6om1 (M:1-191)
3a: SCOP_d1z6oa1 (A:13-212)
4a: SCOP_d1z6ob_ (B:)
4b: SCOP_d1z6oc_ (C:)
4c: SCOP_d1z6ol_ (L:)
4d: SCOP_d1z6od_ (D:)
4e: SCOP_d1z6oe_ (E:)
4f: SCOP_d1z6of_ (F:)
4g: SCOP_d1z6og_ (G:)
4h: SCOP_d1z6oh_ (H:)
4i: SCOP_d1z6oi_ (I:)
4j: SCOP_d1z6oj_ (J:)
4k: SCOP_d1z6ok_ (K:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
automated matches
(54)
Protein domain
:
automated matches
(54)
Trichoplusia ni [TaxId: 7111]
(1)
1a
d1z6on_
N:
1b
d1z6oo_
O:
1c
d1z6ox_
X:
1d
d1z6op_
P:
1e
d1z6oq_
Q:
1f
d1z6or_
R:
1g
d1z6os_
S:
1h
d1z6ot_
T:
1i
d1z6ou_
U:
1j
d1z6ov_
V:
1k
d1z6ow_
W:
Family
:
Ferritin
(232)
Protein domain
:
(Apo)ferritin
(68)
Cabbage looper (Trichoplusia ni), H chain [TaxId: 7111]
(1)
2a
d1z6om1
M:1-191
Cabbage looper (Trichoplusia ni), L chain [TaxId: 7111]
(1)
3a
d1z6oa1
A:13-212
Protein domain
:
automated matches
(70)
Trichoplusia ni [TaxId: 7111]
(1)
4a
d1z6ob_
B:
4b
d1z6oc_
C:
4c
d1z6ol_
L:
4d
d1z6od_
D:
4e
d1z6oe_
E:
4f
d1z6of_
F:
4g
d1z6og_
G:
4h
d1z6oh_
H:
4i
d1z6oi_
I:
4j
d1z6oj_
J:
4k
d1z6ok_
K:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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]
Pfam Domains
(1, 24)
Info
all PFAM domains
1a: PFAM_Ferritin_1z6oL01 (L:38-188)
1b: PFAM_Ferritin_1z6oL02 (L:38-188)
1c: PFAM_Ferritin_1z6oL03 (L:38-188)
1d: PFAM_Ferritin_1z6oL04 (L:38-188)
1e: PFAM_Ferritin_1z6oL05 (L:38-188)
1f: PFAM_Ferritin_1z6oL06 (L:38-188)
1g: PFAM_Ferritin_1z6oL07 (L:38-188)
1h: PFAM_Ferritin_1z6oL08 (L:38-188)
1i: PFAM_Ferritin_1z6oL09 (L:38-188)
1j: PFAM_Ferritin_1z6oL10 (L:38-188)
1k: PFAM_Ferritin_1z6oL11 (L:38-188)
1l: PFAM_Ferritin_1z6oL12 (L:38-188)
1m: PFAM_Ferritin_1z6oX01 (X:22-146)
1n: PFAM_Ferritin_1z6oX02 (X:22-146)
1o: PFAM_Ferritin_1z6oX03 (X:22-146)
1p: PFAM_Ferritin_1z6oX04 (X:22-146)
1q: PFAM_Ferritin_1z6oX05 (X:22-146)
1r: PFAM_Ferritin_1z6oX06 (X:22-146)
1s: PFAM_Ferritin_1z6oX07 (X:22-146)
1t: PFAM_Ferritin_1z6oX08 (X:22-146)
1u: PFAM_Ferritin_1z6oX09 (X:22-146)
1v: PFAM_Ferritin_1z6oX10 (X:22-146)
1w: PFAM_Ferritin_1z6oX11 (X:22-146)
1x: PFAM_Ferritin_1z6oX12 (X:22-146)
View:
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Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Ferritin
(185)
Family
:
Ferritin
(83)
Trichoplusia ni (Cabbage looper)
(1)
1a
Ferritin-1z6oL01
L:38-188
1b
Ferritin-1z6oL02
L:38-188
1c
Ferritin-1z6oL03
L:38-188
1d
Ferritin-1z6oL04
L:38-188
1e
Ferritin-1z6oL05
L:38-188
1f
Ferritin-1z6oL06
L:38-188
1g
Ferritin-1z6oL07
L:38-188
1h
Ferritin-1z6oL08
L:38-188
1i
Ferritin-1z6oL09
L:38-188
1j
Ferritin-1z6oL10
L:38-188
1k
Ferritin-1z6oL11
L:38-188
1l
Ferritin-1z6oL12
L:38-188
1m
Ferritin-1z6oX01
X:22-146
1n
Ferritin-1z6oX02
X:22-146
1o
Ferritin-1z6oX03
X:22-146
1p
Ferritin-1z6oX04
X:22-146
1q
Ferritin-1z6oX05
X:22-146
1r
Ferritin-1z6oX06
X:22-146
1s
Ferritin-1z6oX07
X:22-146
1t
Ferritin-1z6oX08
X:22-146
1u
Ferritin-1z6oX09
X:22-146
1v
Ferritin-1z6oX10
X:22-146
1w
Ferritin-1z6oX11
X:22-146
1x
Ferritin-1z6oX12
X:22-146
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