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Getting 'Biological Unit' information from database.
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Getting 'Exon' information from database.
1Z6C
Asym. Unit
Info
Asym.Unit (444 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF AN EGF PAIR (EGF34) FROM VITAMIN K-DEPENDENT PROTEIN S
Authors
:
T. Drakenberg, H. Ghasriani, E. Thulin, A. M. Thamlitz, A. Muranyi, A. Annila, J. Stenflo
Date
:
22 Mar 05 (Deposition) - 21 Jun 05 (Release) - 28 Apr 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Egf Module, Blood Clotting
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Drakenberg, H. Ghasriani, E. Thulin, A. Muranyi, A. Annila, J. Stenflo
Solution Structure Of The Ca(2+)-Binding Egf3-4 Pair From Vitamin K-Dependent Protein S: Identification Of An Unusual Fold In Egf3.
Biochemistry V. 44 8782 2005
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
2
Ligand/Ion
CALCIUM ION
[
close Hetero Component info
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:160 , GLU A:163 , ASN A:178 , ILE A:179
BINDING SITE FOR RESIDUE CA A 246
2
AC2
SOFTWARE
ASP A:202 , GLU A:205 , ASN A:217 , TYR A:218
BINDING SITE FOR RESIDUE CA A 247
[
close Site info
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SAPs(SNPs)/Variants
(13, 13)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
01: VAR_046831 (E163G, chain A, )
02: VAR_046832 (R192K, chain A, )
03: VAR_067302 (Y193C, chain A, )
04: VAR_046833 (C200S, chain A, )
05: VAR_046834 (D202N, chain A, )
06: VAR_046835 (D204G, chain A, )
07: VAR_046836 (C206G, chain A, )
08: VAR_046837 (E208K, chain A, )
09: VAR_005567 (N217S, chain A, )
10: VAR_046838 (C224R, chain A, )
11: VAR_046839 (C224W, chain A, )
12: VAR_046840 (Y225C, chain A, )
13: VAR_046841 (C226S, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_046831
E
204
G
PROS_HUMAN
Disease (THPH5)
---
A
E
163
G
02
UniProt
VAR_046832
R
233
K
PROS_HUMAN
Disease (THPH5)
41267007
A
R
192
K
03
UniProt
VAR_067302
Y
234
C
PROS_HUMAN
Disease (THPH6)
---
A
Y
193
C
04
UniProt
VAR_046833
C
241
S
PROS_HUMAN
Disease (THPH5)
---
A
C
200
S
05
UniProt
VAR_046834
D
243
N
PROS_HUMAN
Disease (THPH5)
---
A
D
202
N
06
UniProt
VAR_046835
D
245
G
PROS_HUMAN
Disease (THPH5)
---
A
D
204
G
07
UniProt
VAR_046836
C
247
G
PROS_HUMAN
Disease (THPH5)
---
A
C
206
G
08
UniProt
VAR_046837
E
249
K
PROS_HUMAN
Disease (THPH5)
---
A
E
208
K
09
UniProt
VAR_005567
N
258
S
PROS_HUMAN
Disease (THPH5)
---
A
N
217
S
10
UniProt
VAR_046838
C
265
R
PROS_HUMAN
Disease (THPH5)
---
A
C
224
R
11
UniProt
VAR_046839
C
265
W
PROS_HUMAN
Disease (THPH5)
---
A
C
224
W
12
UniProt
VAR_046840
Y
266
C
PROS_HUMAN
Disease (THPH5)
---
A
Y
225
C
13
UniProt
VAR_046841
C
267
S
PROS_HUMAN
Disease (THPH5)
---
A
C
226
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(4, 7)
Info
All PROSITE Patterns/Profiles
1: EGF_3 (-|-|A:160-201|A:202-242)
2: ASX_HYDROXYL (-|-|A:176-187|A:215-226)
3: EGF_2 (-|-|A:185-200)
4: EGF_CA (-|A:160-185|A:202-224)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EGF_3
PS50026
EGF-like domain profile.
PROS_HUMAN
117-155
157-200
201-242
243-283
2
-
-
A:160-201
A:202-242
2
ASX_HYDROXYL
PS00010
Aspartic acid and asparagine hydroxylation site.
PROS_HUMAN
134-145
175-186
217-228
256-267
2
-
-
A:176-187
A:215-226
3
EGF_2
PS01186
EGF-like domain signature 2.
PROS_HUMAN
143-154
184-199
226-241
1
-
-
A:185-200
4
EGF_CA
PS01187
Calcium-binding EGF-like domain signature.
PROS_HUMAN
157-184
201-226
243-265
2
-
A:160-185
A:202-224
[
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]
Exons
(4, 4)
Info
All Exons
Exon 1.9c (A:159-160)
Exon 1.10 (A:160-202)
Exon 1.11 (A:202-242)
Exon 1.12 (A:243-245)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.8b/1.9c
2: Boundary 1.9c/1.10
3: Boundary 1.10/1.11
4: Boundary 1.11/1.12
5: Boundary 1.12/1.13
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000394236
1a
ENSE00001517824
chr3:
93692910-93692518
393
PROS_HUMAN
1-26
26
0
-
-
1.5
ENST00000394236
5
ENSE00001595936
chr3:
93646251-93646094
158
PROS_HUMAN
26-78
53
0
-
-
1.6
ENST00000394236
6
ENSE00001718413
chr3:
93643108-93643084
25
PROS_HUMAN
79-87
9
0
-
-
1.7b
ENST00000394236
7b
ENSE00001597213
chr3:
93629549-93629463
87
PROS_HUMAN
87-116
30
0
-
-
1.8b
ENST00000394236
8b
ENSE00001626925
chr3:
93624987-93624865
123
PROS_HUMAN
116-157
42
0
-
-
1.9c
ENST00000394236
9c
ENSE00001142421
chr3:
93624759-93624628
132
PROS_HUMAN
157-201
45
1
A:159-160
2
1.10
ENST00000394236
10
ENSE00001142413
chr3:
93619773-93619648
126
PROS_HUMAN
201-243
43
1
A:160-202
43
1.11
ENST00000394236
11
ENSE00001142405
chr3:
93617413-93617292
122
PROS_HUMAN
243-283
41
1
A:202-242
41
1.12
ENST00000394236
12
ENSE00001142399
chr3:
93615535-93615420
116
PROS_HUMAN
284-322
39
1
A:243-245
3
1.13
ENST00000394236
13
ENSE00001142392
chr3:
93611966-93611777
190
PROS_HUMAN
322-385
64
0
-
-
1.14
ENST00000394236
14
ENSE00001142384
chr3:
93605347-93605180
168
PROS_HUMAN
386-441
56
0
-
-
1.15
ENST00000394236
15
ENSE00001215429
chr3:
93603740-93603572
169
PROS_HUMAN
442-498
57
0
-
-
1.16
ENST00000394236
16
ENSE00001303348
chr3:
93598158-93598007
152
PROS_HUMAN
498-548
51
0
-
-
1.17
ENST00000394236
17
ENSE00001329474
chr3:
93596035-93595810
226
PROS_HUMAN
549-624
76
0
-
-
1.18b
ENST00000394236
18b
ENSE00001291870
chr3:
93593249-93591881
1369
PROS_HUMAN
624-676
53
0
-
-
[
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]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_EGF_CA_1z6cA01 (A:160-200)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
EGF
(60)
Family
:
EGF_CA
(18)
Homo sapiens (Human)
(14)
1a
EGF_CA-1z6cA01
A:160-200
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Chain A
Asymmetric Unit 1
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